rekado pushed a commit to branch master
in repository guix.
commit 32d8a7d3baf0c188c6faa1b77d3bc9e562b3624e
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Tue Sep 7 14:38:43 2021 +0200
gnu: Add r-bioqc.
* gnu/packages/bioconductor.scm (r-bioqc): New variable.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d1e251f..1287307 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14408,6 +14408,34 @@ analysis, differential node analysis (differential
coexpression analysis),
network and metabolic pathways view.")
(license license:gpl3+)))
+(define-public r-bioqc
+ (package
+ (name "r-bioqc")
+ (version "1.20.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BioQC" version))
+ (sha256
+ (base32
+ "04akp94p0d0zid55m1b1k3qlw7iq914pcg57lihgj3pa92n1sc5l"))))
+ (properties `((upstream-name . "BioQC")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-edger" ,r-edger)
+ ("r-rcpp" ,r-rcpp)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://accio.github.io/BioQC/";)
+ (synopsis "Detect tissue heterogeneity in expression profiles with gene
sets")
+ (description
+ "BioQC performs quality control of high-throughput expression data based
+on tissue gene signatures. It can detect tissue heterogeneity in gene
+expression data. The core algorithm is a Wilcoxon-Mann-Whitney test that is
+optimised for high performance.")
+ (license license:gpl3+)))
+
(define-public r-tximeta
(package
(name "r-tximeta")
