rekado pushed a commit to branch master
in repository guix.
commit 57841a91f5917fdf3166c1751abaa2e7beab257f
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Thu Oct 21 11:47:19 2021 +0000
gnu: Add python-bwapy.
* gnu/packages/bioinformatics.scm (python-bwapy): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index afbacc1..139eb34 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -106,6 +106,7 @@
#:use-module (gnu packages java-compression)
#:use-module (gnu packages jemalloc)
#:use-module (gnu packages jupyter)
+ #:use-module (gnu packages libffi)
#:use-module (gnu packages linux)
#:use-module (gnu packages logging)
#:use-module (gnu packages lsof)
@@ -15112,6 +15113,31 @@ the @dfn{partial order alignment} (POA) algorithm (as
described in
sequences")
(license license:expat)))
+(define-public python-bwapy
+ (package
+ (name "python-bwapy")
+ (version "0.1.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "bwapy" version))
+ (sha256
+ (base32 "090qwx3vl729zn3a7sksbviyg04kc71gpbm3nd8dalqp673x1npw"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-cffi" ,python-cffi)
+ ("python-setuptools" ,python-setuptools)
+ ("python-wheel" ,python-wheel)))
+ (inputs
+ `(("zlib" ,zlib)))
+ (home-page "https://github.com/ACEnglish/bwapy";)
+ (synopsis "Python bindings to bwa alinger")
+ (description "This package provides Python bindings to the bwa mem
+aligner.")
+ ;; These Python bindings are licensed under Mozilla Public License 2.0,
+ ;; bwa itself is licenced under GNU General Public License v3.0.
+ (license license:mpl2.0)))
+
(define-public scregseg
(package
(name "scregseg")
