rekado pushed a commit to branch core-updates-frozen
in repository guix.
commit b764d10e9185cb6a250c94c487e8c5f35078c13b
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Tue Dec 7 17:53:14 2021 +0100
gnu: bwa-pssm: Fix build.
* gnu/packages/bioinformatics.scm (bwa-pssm)[arguments]: Add phase
'patch-C-error.
---
gnu/packages/bioinformatics.scm | 8 ++++++++
1 file changed, 8 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8ca3d12..50f1a18 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2243,6 +2243,14 @@ and more accurate. BWA-MEM also has better performance
than BWA-backtrack for
(base32
"076c4q0cdqz8jgylb067y9zmvxglppnzi3qiscn0xiypgc6lgb5r"))))
(build-system gnu-build-system)
+ (arguments
+ (substitute-keyword-arguments (package-arguments bwa)
+ ((#:phases phases '%standard-phases)
+ `(modify-phases ,phases
+ (add-after 'unpack 'patch-C-error
+ (lambda _
+ (substitute* "pssm.c"
+ (("inline int map") "int map"))))))))
(inputs
`(("gdsl" ,gdsl)
("zlib" ,zlib)
