rekado pushed a commit to branch wip-bioconductor
in repository guix.
commit fbda79cec58485acf966f4ef50bb4be74b095ea3
Author: zimoun <[email protected]>
AuthorDate: Wed Nov 16 23:21:40 2022 +0100
gnu: Add r-hdo-db.
* gnu/packages/bioconductor.scm (r-hdo-db): New variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f3b67fd2bf..c49b2f30bb 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -506,6 +506,31 @@ ID and species. It is used by functions in the
GenomeInfoDb package.")
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
+(define-public r-hdo-db
+ (package
+ (name "r-hdo-db")
+ (version "0.99.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "HDO.db" version 'annotation))
+ (sha256
+ (base32
+ "14ngyxailmxrbxqqi9m7mchqcvchmbg7zm34i8a927b20s6z4z61"))))
+ (properties `((upstream-name . "HDO.db")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-annotationdbi))
+ (native-inputs
+ (list r-knitr))
+ (home-page "https://bioconductor.org/packages/HDO.db";)
+ (synopsis "Annotation maps describing the entire Human Disease Ontology")
+ (description
+ "This package provides a set of annotation maps describing the entire
+Human Disease Ontology. The annotation data comes from
+@url{Humam Disease Ontology repository,
+https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology}.";)
+ (license license:artistic2.0)))
+
(define-public r-homo-sapiens
(package
(name "r-homo-sapiens")
