rekado pushed a commit to branch wip-bioconductor
in repository guix.
commit dd93570a69fdfe913499af973781f6e8be285ff5
Author: zimoun <[email protected]>
AuthorDate: Thu Nov 17 03:50:07 2022 +0100
gnu: r-infercnv: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.14.0.
[propagated-inputs]: Remove r-leiden and r-reshape. Add r-igraph,
r-reshape2,
and r-seurat.
---
gnu/packages/bioconductor.scm | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 934a99ec64..e1b2ff8ee8 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3731,14 +3731,14 @@ arbitrary genomic intervals along chromosomal
ideogram.")
(define-public r-infercnv
(package
(name "r-infercnv")
- (version "1.12.0")
+ (version "1.14.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "infercnv" version))
(sha256
(base32
- "01f021fdxm058733rky46dlvqg7dmf5mn5x9lnq0fspp5665w3bl"))))
+ "11hgw6c67gd3ih5q14a520sjmnlv56qw19z0i6s5pz2slmgflpry"))))
(properties `((upstream-name . "infercnv")))
(build-system r-build-system)
(inputs (list python))
@@ -3762,15 +3762,16 @@ arbitrary genomic intervals along chromosomal
ideogram.")
r-gplots
r-gridextra
r-hiddenmarkov
- r-leiden
+ r-igraph
r-matrix
r-paralleldist
r-phyclust
r-rann
r-rcolorbrewer
- r-reshape
+ r-reshape2
r-rjags
r-singlecellexperiment
+ r-seurat
r-summarizedexperiment
r-tidyr))
(native-inputs (list r-knitr))
