rekado pushed a change to branch master
in repository guix.
from 33d0a549e9 gnu: Add python-pydoc-markdown.
new ce451cdcb8 gnu: Add python-cython-0.29.35.
new 1d91698478 gnu: Add pybind11-2.10.
new 1fb5d95e75 gnu: python-doit: Update to 0.36.0.
new 1c91d45724 gnu: Add python-pyproject-metadata-0.7.
new 08f48f2939 gnu: Add python-pydevtool.
new 22c5d2d835 gnu: meson-python: Update to 0.15.0.
new accd091fff gnu: python-scipy: Update to 1.11.4.
new 299455fef2 gnu: python-tifffile: Update to 2023.12.9.
new 6fbbffd6ef gnu: python-lazy-loader: Update to 0.3.
new 32edfc4a85 gnu: python-imageio: Update to 2.33.1.
new e2c76bdd83 gnu: python-scikit-image: Update to 0.22.0.
new 2057f778a4 gnu: python-pypng: Update to 0.20220715.0.
new e759380796 gnu: python-matplotx: Disable test_png test.
new 247c427302 gnu: python-scikit-learn: Update to 1.3.2.
new ca1749c243 gnu: python-pynndescent: Update to 0.5.11.
new fa5d8c839a gnu: python-umap-learn: Update to 0.5.5.
new 9ea9346168 gnu: Add python-cppy.
new 037cb397c1 gnu: python-kiwisolver: Update to 1.4.5.
new c7646437a2 gnu: Add python-contourpy.
new 82b7c3077f gnu: python-matplotlib: Update to 3.8.2.
new c647bd42a3 gnu: python-seaborn: Update to 0.13.1.
new 6a2f1863e7 gnu: Add python-pytest-nunit.
new 447876fa0d gnu: python-scanpy: Update to 1.9.6.
new 2c94760dcb gnu: python-cleanlab: Disable test_aux_inputs, enable other
tests.
new efd98a9c45 gnu: python-poliastro: Make compatible with latest
matplotlib.
new c085139bc9 gnu: python-captum: Update to 0.7.0.
new b460f89d93 gnu: tadbit: Add missing input.
new c620c8ae81 gnu: python-pyani: Disable tests.
new b8e4be02eb gnu: python-pegasusio: Disable tests.
new 5a7f7156a2 gnu: python-reportlab: Update to 4.0.8.
new 3a58a3ef05 gnu: cnvkit: Update to 0.9.10.
new 3d3a55ec19 gnu: python-plastid: Update to 0.6.1.
new 1c01f7e5c6 gnu: python-cooler: Update to 0.9.1.
new 745b208767 gnu: python-pint: Update to 0.23.
new 3118d95b56 gnu: python-demuxem: Disable tests.
new e833d3abf8 gnu: python-cartopy: Update to 0.22.0.
new 6b4c911a99 gnu: scvelo: Make compatible with latest matplotlib.
new 50dbb9561f gnu: python-fit-nbinom: Disable tests.
new 998df6e047 gnu: python-scikit-optimize: Make compatible with latest
sklearn.
new 3ce25c212f gnu: python-hicmatrix: Update to 17.1.
new cda0f029d6 gnu: python-hicexplorer: Make compatible with latest scipy.
new 0c6db478ec gnu: python-pint: Add missing input.
new 186aa138a6 gnu: python-metpy: Update to 1.6.0.
new e8f68ea334 gnu: Add python-asyncinject.
new 016d136d89 gnu: datasette: Update to 1.0a7.
new fbe0233575 gnu: python-click-default-group: Update to 1.2.4.
new a8c1d812a0 gnu: python-pandas: Update to 1.5.3.
new 65d021a950 gnu: python-scikit-bio: Update to 0.5.9.
new 8ef784e84c gnu: python-adjusttext: Disable tests.
new c3210ae8e2 gnu: python-mysql-connector-python: Defuse time bomb.
new 076e891754 gnu: python-telomerecat: Disable tests.
new e31e5928ae gnu: python-xarray: Update to 2023.12.0.
new 53c65baa3d gnu: python-dask: Propagate click.
new ae42b55d85 gnu: python-geopandas: Update to 0.14.2.
new 579b35ddd1 gnu: python-bbknn: Update to 1.6.0.
new dc1719cba4 gnu: python-astroml: Make compatible with recent Matplot
and Scipy.
new 7d10e49dfc gnu: python-clingraph: Update to 1.1.2.
new 73221c441f gnu: python-pyrdfa3: Update to 3.6.2.
new 15d3de9d36 gnu: gourmet: Add missing input.
The 59 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
gnu/local.mk | 1 +
gnu/packages/astronomy.scm | 29 +-
gnu/packages/bioinformatics.scm | 227 ++++++--------
gnu/packages/build-tools.scm | 20 +-
gnu/packages/check.scm | 23 +-
gnu/packages/databases.scm | 6 +-
gnu/packages/geo.scm | 98 +++---
gnu/packages/machine-learning.scm | 101 +++---
gnu/packages/maths.scm | 10 +-
gnu/packages/nutrition.scm | 5 +-
gnu/packages/patches/python-scikit-bio-1887.patch | 109 +++++++
gnu/packages/pdf.scm | 34 +-
gnu/packages/potassco.scm | 5 +-
gnu/packages/python-science.scm | 201 ++++++------
gnu/packages/python-xyz.scm | 365 ++++++++++++++++------
gnu/packages/rdf.scm | 28 +-
16 files changed, 798 insertions(+), 464 deletions(-)
create mode 100644 gnu/packages/patches/python-scikit-bio-1887.patch
