rekado pushed a commit to branch wip-python-team
in repository guix.
commit a4ad0a46efcea17390e0f6e3a9568597dab7af80
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Sun May 5 12:02:03 2024 +0200
gnu: python-graphtools: Fix tests.
* gnu/packages/graph.scm (python-graphtools)[arguments]: Add 'patch-tests
phase.
Change-Id: I5ffb4321ddd7e33e812bcb1cf67cee069b07b5f8
---
gnu/packages/graph.scm | 9 +++++++++
1 file changed, 9 insertions(+)
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 8be720215e..115fe20b52 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -447,6 +447,15 @@ large networks.")
(list
#:phases
'(modify-phases %standard-phases
+ (add-after 'unpack 'patch-tests
+ (lambda _
+ ;; The warning message has changed in numpy.
+ (substitute* "test/test_data.py"
+ (("\"A sparse matrix was passed, but.*array.\",")
+ "\"Sparse data was passed, but dense data is required. Use
'.toarray()' to convert to a dense numpy array.\",")
+ ;; anndata prints a warning that causes the test to fail.
+ (("import warnings" m)
+ (string-append m "\nwarnings.filterwarnings(\"ignore\")")))))
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
