rekado pushed a commit to branch master
in repository guix.
commit 57769fb0b34d65220b6234c78a7fa45b8593b2ab
Author: Mădălin Ionel Patrașcu <[email protected]>
AuthorDate: Tue Apr 23 16:23:05 2024 +0200
gnu: Add r-seraster.
* gnu/packages/bioinformatics.scm (r-seraster): New variable.
Change-Id: I9f9fd24a9aa563f7c74154e613b85dee46bdcf79
---
gnu/packages/bioinformatics.scm | 39 +++++++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5775d01c8a..a772229acb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13330,6 +13330,45 @@ bound and non bound genomic regions to accurately
identify transcription
factors bound at the specific regions.")
(license license:gpl2+)))
+(define-public r-seraster
+ ;; There are no tags or releases.
+ (let ((commit "4fdc1ffe5d3feb65de9880329d221cf276b393a1")
+ (revision "1"))
+ (package
+ (name "r-seraster")
+ (version (git-version "0.99.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JEFworks-Lab/SEraster";)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0y33lk8q0h9nfzmf7slxxvw3l0djassp4l63nsjpm3p6z4pah5s4"))))
+ (properties `((upstream-name . "SEraster")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biocparallel
+ r-ggplot2
+ r-matrix
+ r-rearrr
+ r-sf
+ r-spatialexperiment
+ r-summarizedexperiment))
+ (home-page "https://github.com/JEFworks-Lab/SEraster";)
+ (synopsis
+ "Rasterization framework for scalable spatial omics data analysis")
+ (description
+ "This package is a rasterization preprocessing framework that aggregates
+cellular information into spatial pixels to reduce resource requirements for
+spatial omics data analysis. SEraster reduces the number of points in spatial
+omics datasets for downstream analysis through a process of rasterization where
+single cells gene expression or cell-type labels are aggregated into equally
+sized pixels based on a user-defined resolution. SEraster can be incorporated
+with other packages to conduct downstream analyses for spatial omics datasets,
+such as detecting spatially variable genes.")
+ (license license:gpl3))))
+
(define-public emboss
(package
(name "emboss")
