rekado pushed a commit to branch python-team
in repository guix.
commit 42552ae0f713780de3a47799e9a418f20e6850e9
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Fri Jan 10 16:31:12 2025 +0100
gnu: scregseg: Patch for numpy compatibility.
* gnu/packages/bioinformatics.scm (scregseg)[arguments]: Add phase
'compatibility.
Change-Id: I738d675c10acdbae7d40b3f806703ba8f7936a19
---
gnu/packages/bioinformatics.scm | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5c9c82c9c9..c872801fe1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -23368,6 +23368,11 @@ populations.")
(add-before 'check 'build-extensions
(lambda _
(invoke "python" "setup.py" "build_ext" "--inplace")))
+ ;; NumPy 1.20 deprecated the type wrappers for int and float.
+ (add-after 'unpack 'compatibility
+ (lambda _
+ (substitute* "src/scregseg/_utils.pyx"
+ (("np.float") "float"))))
(add-after 'unpack 'do-not-fail-to-find-sklearn
(lambda _
;; XXX: I have no idea why it cannot seem to find sklearn.
