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new fa13f86235 gnu: Add python-ngesh.
fa13f86235 is described below
commit fa13f86235c86ebcacf60df9ad76b2ff532caefd
Author: Navid Afkhami <[email protected]>
AuthorDate: Thu Jan 9 16:09:30 2025 +0000
gnu: Add python-ngesh.
* gnu/packages/bioinformatics.scm (python-ngesh): New variable.
Change-Id: If51f3075037647e319efa9468331677a845b30cb
Signed-off-by: Ricardo Wurmus <[email protected]>
---
gnu/packages/bioinformatics.scm | 29 ++++++++++++++++++++++++++++-
1 file changed, 28 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7a3eebf23d..f12019372c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -23,7 +23,7 @@
;;; Copyright © 2021 Hong Li <[email protected]>
;;; Copyright © 2021, 2022, 2023 Simon Tournier <[email protected]>
;;; Copyright © 2021 Felix Gruber <[email protected]>
-;;; Copyright © 2022, 2023, 2024 Navid Afkhami <[email protected]>
+;;; Copyright © 2022-2025 Navid Afkhami <[email protected]>
;;; Copyright © 2022 Antero Mejr <[email protected]>
;;; Copyright © 2024 Alexis Simon <[email protected]>
;;; Copyright © 2024 Spencer King <[email protected]>
@@ -2884,6 +2884,33 @@ algorithmic improvements and is scalable for larger data
sets (millions of
cells).")
(license license:expat)))
+(define-public python-ngesh
+ (package
+ (name "python-ngesh")
+ (version "1.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/tresoldi/ngesh";)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "07sj4x95b5hvx57pw24f80sk4ag4hkg1z6wzym3pzi8n5gn85n1z"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-ete3 python-numpy python-six))
+ (native-inputs (list python-black python-flake8 python-pytest python-twine
+ python-wheel))
+ (home-page "https://github.com/tresoldi/ngesh";)
+ (synopsis "Library for phylogenetic tree simulation")
+ (description
+ "Ngesh is a Python library and CLI tool for simulating phylogenetic trees
+and data. It is intended for benchmarking phylogenetic methods, especially in
+historical linguistics andstemmatology. The generation of stochastic
+phylogenetic trees also goes by the name simulationmethods for phylogenetic
+trees, synthetic data generation, or just phylogenetic tree simulation.")
+ (license license:expat)))
+
(define-public python-parabam
(package
(name "python-parabam")
