rekado pushed a commit to branch master
in repository guix.
commit fa9789b36cecdb70312049a0aee34be17c383cf3
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Fri Dec 27 21:31:21 2024 +0100
gnu: python-schema-salad: Update to 8.8.20241206093842.
* gnu/packages/bioinformatics.scm (python-schema-salad): Update to
8.8.20241206093842.
[arguments]: Patch tox.ini.
[propagated-inputs]: Remove python-importlib-resources, python-setuptools,
and
python-typing-extensions.
[native-inputs]: Add python-cachecontrol, python-mypy, python-setuptools,
python-setuptools-scm, python-types-dataclasses, python-types-requests, and
python-types-setuptools.
Change-Id: I22ca7ad772078192117a1139adca410b53844008
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++--------
1 file changed, 16 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 433e60a47c..28ace95fbc 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5962,14 +5962,14 @@ Note that this package has been deprecated in favor of
@code{pyfaidx}.")
(define-public python-schema-salad
(package
(name "python-schema-salad")
- (version "8.5.20240102191335")
+ (version "8.8.20241206093842")
(source
(origin
(method url-fetch)
- (uri (pypi-uri "schema-salad" version))
+ (uri (pypi-uri "schema_salad" version))
(sha256
(base32
- "035202p696i3jylb8b3nm9qcxsqby15hhqn1dl4nrz73a17p0ckx"))))
+ "13vx3lqivfzsh1qdvx89vxnn25l3ssmzyh06g74psl4kmf9pj51a"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -5983,6 +5983,8 @@ Note that this package has been deprecated in favor of
@code{pyfaidx}.")
(string-append "version=\"" #$version "\"")))))
(add-before 'check 'skip-failing-tests
(lambda _
+ (substitute* "tox.ini"
+ (("^addopts=.*") ""))
;; Skip tests that require network access.
(let ((skip-test
(lambda (test-pattern)
@@ -6000,16 +6002,22 @@ Note that this package has been deprecated in favor of
@code{pyfaidx}.")
(skip-test all)))))))))
(propagated-inputs
(list python-cachecontrol
- python-importlib-resources
python-mistune
python-mypy-extensions
python-rdflib
python-requests
- python-ruamel.yaml
- python-setuptools ; For pkg_resources.
- python-typing-extensions))
+ python-ruamel.yaml))
(native-inputs
- (list python-black python-pytest python-pytest-runner
+ (list python-black
+ python-cachecontrol
+ python-mypy
+ python-pytest
+ python-pytest-runner
+ python-setuptools
+ python-setuptools-scm
+ python-types-dataclasses
+ python-types-requests
+ python-types-setuptools
python-wheel))
(home-page "https://github.com/common-workflow-language/schema_salad";)
(synopsis "Schema Annotations for Linked Avro Data (SALAD)")
