rekado pushed a commit to branch master
in repository guix.
commit def1f7ba661c5896b0e90b0f6d3a6d996306cac8
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Thu Jan 16 22:53:44 2025 +0100
gnu: Move python-pysnptools to (gnu packages bioinformatics).
* gnu/packages/python-xyz.scm (python-pysnptools): Move from here...
* gnu/packages/bioinformatics.scm (python-pysnptools): ...to here.
Change-Id: I4dbd9cbe3f2d9a6dd4906be79b78862b39a57c28
---
gnu/packages/bioinformatics.scm | 42 +++++++++++++++++++++++++++++++++++++++++
gnu/packages/python-xyz.scm | 42 -----------------------------------------
2 files changed, 42 insertions(+), 42 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 774a6f3f97..c98f6022bf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3406,6 +3406,48 @@ annotation, provides Python genomic feature search and
sequence retrieval from
the managed genomes, STAR indexing and mapping and more.")
(license license:gpl3+))))
+(define-public python-pysnptools
+ (package
+ (name "python-pysnptools")
+ (version "0.5.14")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pysnptools" version))
+ (sha256
+ (base32
+ "1babnyky5fk93as1ybdvpz9x3x5099gkgscxflngzfswin23mspk"))))
+ (build-system pyproject-build-system)
+ ;; Tests require test data from python-bed-reader, which fetches data with
+ ;; python-pooch.
+ (arguments (list #:tests? #f))
+ (propagated-inputs
+ (list python-bed-reader
+ python-cloudpickle
+ python-h5py
+ python-more-itertools
+ python-numpy
+ python-pandas
+ python-psutil
+ python-scipy))
+ (native-inputs
+ (list python-pytest
+ python-pytest-cov
+ python-pytest-datadir
+ python-pytest-doctestplus
+ python-setuptools
+ python-sphinx
+ python-sphinx-rtd-theme
+ python-wheel))
+ (home-page "http://microsoftgenomics.github.io/PySnpTools/";)
+ (synopsis "Library for reading and manipulating genetic data")
+ (description
+ "PySnpTools is a library for reading and manipulating genetic data. It
+can, for example, efficiently read whole PLINK *.bed/bim/fam files or parts of
+those files. It can also efficiently manipulate ranges of integers using set
+operators such as union, intersection, and difference.")
+ (license license:asl2.0)))
+
(define-public python-ega-download-client
(package
(name "python-ega-download-client")
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 3b1e90621b..1995f113d7 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -10521,48 +10521,6 @@ snippets with input parameters (e.g., the size of an
array) and plotting
the results.")
(license license:gpl3+)))
-(define-public python-pysnptools
- (package
- (name "python-pysnptools")
- (version "0.5.14")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "pysnptools" version))
- (sha256
- (base32
- "1babnyky5fk93as1ybdvpz9x3x5099gkgscxflngzfswin23mspk"))))
- (build-system pyproject-build-system)
- ;; Tests require test data from python-bed-reader, which fetches data with
- ;; python-pooch.
- (arguments (list #:tests? #f))
- (propagated-inputs
- (list python-bed-reader
- python-cloudpickle
- python-h5py
- python-more-itertools
- python-numpy
- python-pandas
- python-psutil
- python-scipy))
- (native-inputs
- (list python-pytest
- python-pytest-cov
- python-pytest-datadir
- python-pytest-doctestplus
- python-setuptools
- python-sphinx
- python-sphinx-rtd-theme
- python-wheel))
- (home-page "http://microsoftgenomics.github.io/PySnpTools/";)
- (synopsis "Library for reading and manipulating genetic data")
- (description
- "PySnpTools is a library for reading and manipulating genetic data. It
-can, for example, efficiently read whole PLINK *.bed/bim/fam files or parts of
-those files. It can also efficiently manipulate ranges of integers using set
-operators such as union, intersection, and difference.")
- (license license:asl2.0)))
-
(define-public python-pykdtree
(package
(name "python-pykdtree")
