sharlatan pushed a commit to branch go-team
in repository guix.
commit 1b83198655db556316ce29933504a8e5476bb3e6
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Wed Jan 22 21:00:59 2025 +0000
gnu: Add go-github-com-biogo-store.
This change merges all extracted subdirs under the same variable as it's
distributed in single module according to project's go.mod.
* gnu/packages/bioinformatics.scm (go-github-com-biogo-store-kdtree,
go-github-com-biogo-store-llrb, go-github-com-biogo-store-step):
Delete variables.
(go-github-com-biogo-store): New variable.
[arguments] <skip-build?>: No go files in project's root.
<import-path>: Set as seen in go.mod.
(go-github-com-biogo-biogo) [propagated-inputs]: Remove
go-github-com-biogo-store-kdtree, go-github-com-biogo-store-llrb, and
go-github-com-biogo-store-step. Add go-github-com-biogo-store.
Change-Id: I1db4efea31fc7f1f5e96b21e874a523cf631f370
---
gnu/packages/bioinformatics.scm | 50 +++++------------------------------------
1 file changed, 6 insertions(+), 44 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 170651d991..f778d71fd2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -24338,9 +24338,9 @@ for nanopore cDNA, native RNA, and PacBio sequencing
reads.")
functions.")
(license license:bsd-3)))
-(define-public go-github-com-biogo-store-interval
+(define-public go-github-com-biogo-store
(package
- (name "go-github-com-biogo-store-interval")
+ (name "go-github-com-biogo-store")
(version "0.0.0-20201120204734-aad293a2328f")
(source (origin
(method git-fetch)
@@ -24353,8 +24353,9 @@ functions.")
"0skizrp1j6vgbl0g1kmh73picagqlvwckaqs0gkl6rai5lckxj8a"))))
(build-system go-build-system)
(arguments
- '(#:import-path "github.com/biogo/store/interval"
- #:unpack-path "github.com/biogo/store"))
+ (list
+ #:skip-build? #t
+ #:import-path "github.com/biogo/store"))
(propagated-inputs
(list go-gopkg-in-check-v1
go-github-com-kr-pretty))
@@ -24365,42 +24366,6 @@ functions.")
useful for bioinformatic analysis.")
(license license:bsd-3)))
-(define-public go-github-com-biogo-store-kdtree
- (package
- (inherit go-github-com-biogo-store-interval)
- (name "go-github-com-biogo-store-kdtree")
- (arguments
- '(#:import-path "github.com/biogo/store/kdtree"
- #:unpack-path "github.com/biogo/store"))
- (propagated-inputs
- (list go-gopkg-in-check-v1
- go-github-com-kr-pretty))
- (synopsis "kdtree store type for biogo")))
-
-(define-public go-github-com-biogo-store-llrb
- (package
- (inherit go-github-com-biogo-store-interval)
- (name "go-github-com-biogo-store-llrb")
- (arguments
- '(#:import-path "github.com/biogo/store/llrb"
- #:unpack-path "github.com/biogo/store"))
- (propagated-inputs
- (list go-gopkg-in-check-v1
- go-github-com-kr-pretty))
- (synopsis "LLRB store for biogo")))
-
-(define-public go-github-com-biogo-store-step
- (package
- (inherit go-github-com-biogo-store-interval)
- (name "go-github-com-biogo-store-step")
- (arguments
- '(#:import-path "github.com/biogo/store/step"
- #:unpack-path "github.com/biogo/store"))
- (propagated-inputs
- (list go-gopkg-in-check-v1
- go-github-com-kr-pretty))
- (synopsis "Step store for biogo")))
-
(define-public go-github-com-biogo-hts
(package
(name "go-github-com-biogo-hts")
@@ -24451,10 +24416,7 @@ CSIv1, CSIv2 and FAI files.")
'(#:import-path "github.com/biogo/biogo"))
(propagated-inputs
(list go-gopkg-in-check-v1
- go-github-com-biogo-store-interval
- go-github-com-biogo-store-kdtree
- go-github-com-biogo-store-llrb
- go-github-com-biogo-store-step
+ go-github-com-biogo-store
go-github-com-biogo-hts
go-github-com-biogo-graph))
(home-page "https://github.com/biogo/biogo";)
