guix_mirror_bot pushed a commit to branch master
in repository guix.
commit eb580ae9ce2c4668d64b351da1750851f45e7dfd
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Fri Aug 15 23:26:48 2025 +0100
gnu: vembrane: Update to 1.0.7.
* gnu/packages/bioinformatics.scm (vembrane): Update to 1.0.7.
[arguments] <phases>: Remove 'relax-requirements; add 'use-poetry-core.
[native-inputs]: Remove poetry; add python-poetry-core.
Change-Id: I50aca480b3aded3714d6e999efd3d12a4513e6a3
---
gnu/packages/bioinformatics.scm | 31 +++++++++++++++++--------------
1 file changed, 17 insertions(+), 14 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c9d745c0d6..b249abb2d9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -21337,32 +21337,35 @@ repeated areas between contigs.")
(define-public vembrane
(package
(name "vembrane")
- (version "0.13.2")
+ (version "1.0.7")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/vembrane/vembrane";)
- (commit (string-append "v" version))))
+ (url "https://github.com/vembrane/vembrane";)
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
- "1gdih56gpqd8ks3sd4ah844kac09hi3g073k9gvazb32ah50900w"))))
+ "127wmwj0162nfaql68jwxlkz7rbnjya70xrj4j8zwvcnxcj7x5v3"))))
(build-system pyproject-build-system)
(arguments
(list
#:phases
- '(modify-phases %standard-phases
- (add-after 'unpack 'relax-requirements
- (lambda _
- (substitute* "pyproject.toml"
- (("pysam = \"\\^0.19\"") "pysam = \"^0.20\"")
- (("numpy = \\{ version = \"\\^1.23\"")
- "numpy = { version = \"^1\"")))))))
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'use-poetry-core
+ (lambda _
+ ;; Patch to use the core poetry API.
+ (substitute* "pyproject.toml"
+ (("poetry.masonry.api") "poetry.core.masonry.api")))))))
(inputs
- (list python-asttokens python-intervaltree python-numpy
- python-pysam python-pyyaml))
+ (list python-asttokens
+ python-intervaltree
+ python-numpy
+ python-pysam
+ python-pyyaml))
(native-inputs
- (list poetry python-pytest))
+ (list python-poetry-core
+ python-pytest))
(home-page "https://github.com/vembrane/vembrane";)
(synopsis "Filter VCF/BCF files with Python expressions")
(description "Vembrane simultaneously filters variants based on
