guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 832f6130d6a6b5df4c91f242439026debeaf1b5d
Author: Janneke Nieuwenhuizen <[email protected]>
AuthorDate: Thu Aug 28 16:54:23 2025 +0200
gnu: Add python-changeo.
* gnu/packages/python-xyz.scm (python-changeo): New variable.
Change-Id: Id8de5ece784bf01e43e0e74aa178a4962428220a
---
gnu/packages/bioinformatics.scm | 39 +++++++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0014b31d32..bd3be13616 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4738,6 +4738,45 @@ in a modular way.")
high-throughput sequencing of B cell and T cell repertoires.")
(license license:agpl3)))
+(define-public python-changeo
+ (package
+ (name "python-changeo")
+ (version "1.3.4")
+ (home-page "https://github.com/immcantation/changeo";)
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url home-page)
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1230bb7672n6nqkrw2fvrprknchhlvvxb76l1r4g6ybrq0g7l0rb"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs
+ (list python-airr
+ python-biopython
+ python-importlib-resources-6
+ python-numpy
+ python-packaging
+ python-pandas
+ python-presto
+ python-pyyaml
+ python-scipy))
+ (native-inputs
+ (list python-airr
+ python-setuptools
+ python-wheel))
+ (arguments
+ (list
+ #:build-backend "setuptools.build_meta"))
+ (synopsis "Repertoire clonal assignment toolkit")
+ (description "Change-O is a collection of tools for processing the output
+of V(D)J alignment tools, assigning clonal clusters to immunoglobulin (Ig)
+sequences, and reconstructing germline sequences.")
+ (license license:gpl3)))
+
(define-public python-fastalite
(package
(name "python-fastalite")
