guix_mirror_bot pushed a commit to branch astro-updates in repository guix.
commit 324f3e099835c04a6a641c9c3300464d34ef69a7 Author: Sharlatan Hellseher <[email protected]> AuthorDate: Tue Oct 14 21:44:40 2025 +0100 gnu: python-reproject: Improve package. * gnu/packages/astronomy.scm (python-reproject): Update to 0.14.1. [arguments] <test-flags>: Limit to 8 threads to relax load on host machine running them. <phases>: Remove 'create-setup.py, writable-compiler, 'prepare-test-environment; use custom 'check. [inputs]: Add python-asdf, python-gwcs, python-pyvo, python-shapely, and python-sunpy-minimal. [propagated-inputs]: Remove python-asdf, python-gwcs, python-pyvo, and python-shapely. [native-inputs]: Remove python-cython-3, python-asdf, python-gwcs, python-pyvo, and python-wheel; add python-cython. Change-Id: Ie4d47ff47c120dca4ac1ab609e7bf142a9f181a0 --- gnu/packages/astronomy.scm | 72 +++++++++++++++++++--------------------------- 1 file changed, 29 insertions(+), 43 deletions(-) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 90dc86a576..0125d545d5 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -7346,7 +7346,7 @@ PSF} describing how the optical system spreads light from sources.") (define-public python-reproject (package (name "python-reproject") - (version "0.14.1") + (version "0.14.1") ;XXX: Newer versions need to be build with NumPy 2+ (source (origin (method url-fetch) @@ -7356,64 +7356,50 @@ PSF} describing how the optical system spreads light from sources.") (build-system pyproject-build-system) (arguments (list + ;; tests: 2062 passed, 398 skipped, 3 warnings #:test-flags #~(list "--arraydiff" "--arraydiff-default-format=fits" - "--numprocesses" (number->string (parallel-job-count)) - "--pyargs" "reproject") + "--numprocesses" (number->string (min 8 (parallel-job-count))) + "--pyargs" "reproject" + ;; ValueError: Could not determine celestial frame corresponding + ;; to the specified WCS object + "-k" "not test_solar_wcs") #:phases #~(modify-phases %standard-phases - ;; setup.py was removed in a659a260bdd7635cddc8f33c4ea04a3b6d8c1f84 - ;; for some unknown reason, which caused the package to fail to - ;; build. It is being recreated based on that commit. - ;; TODO: Check how to implement it in python-build-system. - (add-after 'unpack 'create-setup.py - (lambda _ - (call-with-output-file "setup.py" - (lambda (port) - (format port "from setuptools import setup -from extension_helpers import get_extensions -setup(ext_modules=get_extensions())"))))) - (add-before 'install 'writable-compiler - (lambda _ - (make-file-writable "reproject/_compiler.c"))) - (add-before 'check 'writable-compiler - (lambda _ - (make-file-writable "reproject/_compiler.c"))) - (add-before 'check 'prepare-test-environment - (lambda _ - (setenv "HOME" "/tmp") - ;; Cython extensions have to be built before running the tests. - (invoke "python" "setup.py" "build_ext" "--inplace")))))) - (propagated-inputs + ;; Use built library for tests. + (replace 'check + (lambda* (#:key tests? test-flags #:allow-other-keys) + (when tests? + (with-directory-excursion #$output + (setenv "HOME" "/tmp") + (apply invoke "pytest" "-vv" test-flags)))))))) + (native-inputs + (list python-cython + python-extension-helpers + python-pytest-astropy + python-pytest-xdist + python-setuptools-scm)) + (inputs (list python-asdf - python-astropy + python-gwcs + python-pyvo + python-shapely + python-sunpy-minimal)) + (propagated-inputs + (list python-astropy python-astropy-healpix python-cloudpickle python-dask python-fsspec - python-gwcs python-numpy - python-pyvo python-scipy - python-shapely python-zarr)) - (native-inputs - (list python-cython-3 - python-extension-helpers - python-asdf - python-gwcs - python-pytest-astropy - python-pytest-xdist - python-pyvo - ;; python-sunpy ; circular dependencies, test optional - python-setuptools-scm - python-wheel)) (home-page "https://reproject.readthedocs.io";) (synopsis "Astronomical image reprojection in Python") (description - "This package provides a functionality to reproject astronomical images using -various techniques via a uniform interface, where reprojection is the + "This package provides a functionality to reproject astronomical images +using various techniques via a uniform interface, where reprojection is the re-gridding of images from one world coordinate system to another e.g. changing the pixel resolution, orientation, coordinate system.") (license license:bsd-3)))
