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new 3f738d5709 gnu: Remove fast5.
3f738d5709 is described below
commit 3f738d57099d51f8042fe2edd720450536be1307
Author: Anderson Torres <[email protected]>
AuthorDate: Sat Aug 30 22:39:26 2025 -0300
gnu: Remove fast5.
* gnu/packages/bioinformatics.scm (fast5): Remove variable.
Fixes: guix/guix#2340
Change-Id: I2d1a121e2338944ab52bba59fe1600d2b7f4d84f
Signed-off-by: Andreas Enge <[email protected]>
---
gnu/packages/bioinformatics.scm | 39 ---------------------------------------
1 file changed, 39 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 04ddc84f24..31f00be99d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8439,45 +8439,6 @@ variety of diversity measures including those that make
use of phylogenetic
similarity of community members.")
(license license:gpl3+)))
-(define-public fast5
- (package
- (name "fast5")
- (version "0.6.5")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/mateidavid/fast5";)
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1dsq3x1662ck1bcmcmqhblnhmypfppgysblgj2xr4lr6fl4si4pk"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:tests? #f ;There are no tests.
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'use-system-hdf5
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (setenv "HDF5_INCLUDE_DIR"
- (string-append #$(this-package-input "hdf5") "/include"))
- (setenv "HDF5_LIB_DIR"
- (string-append #$(this-package-input "hdf5") "/lib"))))
- (add-after 'unpack 'chdir
- (lambda _
- (chdir "python"))))))
- (inputs (list hdf5-1.10))
- (propagated-inputs
- (list python-dateutil))
- (native-inputs
- (list python-cython python-setuptools python-wheel))
- (home-page "https://github.com/mateidavid/fast5";)
- (synopsis "Library for accessing Oxford Nanopore sequencing data")
- (description "This package provides a lightweight C++ library for accessing
-Oxford Nanopore Technologies sequencing data.")
- (license license:expat)))
-
(define-public fasttree
(package
(name "fasttree")
