guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 767873982c2be1539375ee274ea8cab7c027a188
Author: Janneke Nieuwenhuizen <[email protected]>
AuthorDate: Tue Sep 2 22:07:30 2025 +0200
gnu: Add python-snakemake-executor-plugin-slurm.
* gnu/packages/python-science.scm (python-snakemake-executor-plugin-slurm):
New variable.
Change-Id: I7ca462dc224dc6947130fa9842f26c25cd7349a4
---
gnu/packages/python-science.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 998e3dad2c..c829e0810e 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -3464,6 +3464,37 @@ Snakemake and its storage plugins.")
SLURM jobs (meant for internal use by
python-snakemake-executor-plugin-slurm).")
(license license:expat)))
+(define-public python-snakemake-executor-plugin-slurm
+ (package
+ (name "python-snakemake-executor-plugin-slurm")
+ (version "1.7.0")
+ (home-page "https://github.com/snakemake/snakemake-executor-plugin-slurm/";)
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url home-page)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0x7ghrkvmxqbcjl69hxp5axa1av3s0mdc0i9xjg8qjnd3hgd82r3"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "python3" "tests/tests.py")))))))
+ (native-inputs (list python-pandas
+ python-poetry-core
+ python-pytest
+ python-snakemake-executor-plugin-slurm-jobstep
+ snakemake))
+ (synopsis "Snakemake executor plugin: slurm")
+ (description "A Snakemake executor plugin for running SLURM jobs.")
+ (license license:expat)))
+
(define-public python-sparse
(package
(name "python-sparse")
