05/05: gnu: Remove python-velocyto.

[guix-commits]

guix_mirror_bot pushed a commit to branch master
in repository guix.

commit 7dfdf10fb661f3f4a087a3338525684ecfc11e15
Author: Andreas Enge <andr...@enge.fr>
AuthorDate: Thu Oct 23 18:02:15 2025 +0200

    gnu: Remove python-velocyto.
    
    * gnu/packages/bioinformatics.scm (python-velocyto): Delete variable.
    
    Fixes: guix/guix#2922
    Change-Id: Ifcc556de612ee596019b4164e9f5b33e76bf67a3
---
 gnu/packages/bioinformatics.scm | 40 ----------------------------------------
 1 file changed, 40 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2e706c80e2..db5c0ff1f9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -21444,46 +21444,6 @@ filtered first.  If no annotation entry remains, the 
entire variant is
 deleted.")
     (license license:expat)))
 
-(define-public python-velocyto
-  (package
-    (name "python-velocyto")
-    (version "0.17.17")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (pypi-uri "velocyto" version))
-       (sha256
-        (base32 "0fgygyzqgrq32dv6a00biq1p1cwi6kbl5iqblxq1kklj6b2mzmhs"))
-       (modules '((guix build utils)))
-       ;; Delete generated C files.
-       (snippet '(for-each delete-file
-                           (find-files "." "\\.c")))))
-    (build-system pyproject-build-system)
-    (arguments
-     '(#:phases (modify-phases %standard-phases
-                  ;; Numba needs a writable dir to cache functions.
-                  (add-before 'check 'set-numba-cache-dir
-                    (lambda _
-                      (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
-    (native-inputs (list python-joblib python-setuptools python-wheel))
-    (propagated-inputs (list python-click
-                             python-cython
-                             python-h5py
-                             python-loompy
-                             python-matplotlib
-                             python-numba
-                             python-numpy
-                             python-pandas
-                             python-pysam
-                             python-scikit-learn
-                             python-scipy))
-    (home-page "https://github.com/velocyto-team/velocyto.py";)
-    (synopsis "RNA velocity analysis for single cell RNA-seq data")
-    (description
-     "Velocyto is a library for the analysis of RNA velocity.  Velocyto
-includes a command line tool and an analysis pipeline.")
-    (license license:bsd-2)))
-
 (define-public arriba
   (package
     (name "arriba")