guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit c264dddbc5e4b10cb28e6bc2f019fa0243c248ef
Author: Simon Tournier <[email protected]>
AuthorDate: Tue Oct 28 17:20:06 2025 +0100
gnu: r-dada2: Adjust GCC@14.
* gnu/packages/bioconductor.scm (r-dada2)[arguments]: Add phase that
decreases
GCC@14 strictness.
Change-Id: Ie488f6f2ecffa38b1327ec5efb726c49c2c04319
---
gnu/packages/bioconductor.scm | 10 ++++++++++
1 file changed, 10 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index af99a8547c..b15064ad1a 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -28255,6 +28255,16 @@ visualizing bisulfite sequencing data.")
"0lxva0lvh3xcpkrjalkg2ps8jlzaypnsy3ibd9mk4lnjpbn5hiii"))))
(properties `((upstream-name . "dada2")))
(build-system r-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'install 'relax-gcc-14-strictness
+ (lambda _
+ (substitute* "src/Makevars"
+ (("CXX_STD = CXX11")
+ "CXX_STD = CXX11
+PKG_CXXFLAGS=-g -O2 -Wno-error=changes-meaning")))))))
(propagated-inputs
(list r-biocgenerics
r-biostrings
