guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit 13f46609ded2cc7562aa33ad81b0a8c5d69fd65e
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Tue Nov 11 13:04:09 2025 +0100
gnu: r-msnbase: Restore tests that failed because of libxml2.
* gnu/packages/bioconductor.scm (r-msnbase)[arguments]: Restore two tests;
fix
them by adding 'ensure-libxml2-works phase.
Change-Id: I555f19d5bc749cdd458af4b55a2a5a2e89c7d190
---
gnu/packages/bioconductor.scm | 9 ---------
1 file changed, 9 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 71afa721fe..0d6bc9bc7d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11666,15 +11666,6 @@ containers.")
(string-append "XML::libxmlFeatures()\n" m)))))
(add-after 'unpack 'delete-bad-tests
(lambda _
- ;; These tests fail since the upgrade to libxml2 2.14, which
- ;; removed transparent decompression.
- (with-directory-excursion "tests/testthat/"
- (substitute* "test_centroided.R"
- ((".*isCentroidedFromFile.*" m)
- (string-append m "skip('guix')\n")))
- (substitute* "test_MSnExp.R"
- ((".*isolation window.*" m)
- (string-append m "skip('guix')\n"))))
;; Needs r-prolocdata
(for-each delete-file
'("tests/testthat/test_average.R"
