guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit c8d6bec4edcac8c293db04c0c9cc8447f74319e0
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Mon Nov 10 18:38:43 2025 +0100
gnu: r-msnbase: Disable two tests.
* gnu/packages/bioconductor.scm (r-msnbase)[arguments]: Turn off two more
tests in 'delete-bad-tests phase.
Change-Id: I9bfa59a09db00e25c7b65cf4d642debfeb377f93
---
gnu/packages/bioconductor.scm | 9 +++++++++
1 file changed, 9 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0d6bc9bc7d..71afa721fe 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11666,6 +11666,15 @@ containers.")
(string-append "XML::libxmlFeatures()\n" m)))))
(add-after 'unpack 'delete-bad-tests
(lambda _
+ ;; These tests fail since the upgrade to libxml2 2.14, which
+ ;; removed transparent decompression.
+ (with-directory-excursion "tests/testthat/"
+ (substitute* "test_centroided.R"
+ ((".*isCentroidedFromFile.*" m)
+ (string-append m "skip('guix')\n")))
+ (substitute* "test_MSnExp.R"
+ ((".*isolation window.*" m)
+ (string-append m "skip('guix')\n"))))
;; Needs r-prolocdata
(for-each delete-file
'("tests/testthat/test_average.R"
