guix_mirror_bot pushed a commit to branch astro-updates in repository guix.
commit 2a6ce2e226d1a96a33f9d3c2cea2a12d63a4c0c7 Author: Sharlatan Hellseher <[email protected]> AuthorDate: Thu Nov 13 16:56:21 2025 +0000 gnu: tangos: Update to 1.10.0. * gnu/packages/astronomy.scm (tangos): Update to 1.10.0. [arguments] <test-flags>: Enable more tests. <phases>: Add 'pre-check. [inputs]: Remove python-sqlalchemy; add python-psycopg2, python-pymysql, and python-sqlalchemy-2. [native-inputs]: Remove python-pynbody-1 and python-setuptools; add python-pynbody. Change-Id: Ied60d7bee177266d2e8e7f8fe1471a18505e7a8b --- gnu/packages/astronomy.scm | 29 +++++++++++++++-------------- 1 file changed, 15 insertions(+), 14 deletions(-) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 3c69b1eeef..263dcc99aa 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -11007,7 +11007,7 @@ any arbitrary astrometric projection defined in the WCS standard.") (define-public tangos (package (name "tangos") - (version "1.9.1") ;1.10.0+ requires python-pynbody 2+ + (version "1.10.0") (source (origin (method git-fetch) @@ -11016,19 +11016,15 @@ any arbitrary astrometric projection defined in the WCS standard.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0vmjkhmqnr6abg7mybib1gllqbimv4ylgzvwxnsw0kk6cvv4qgl9")))) + (base32 "1dbjpmhbz6hqq9r7hpxqsw2pcqfr2g4x35pb0j01w0m902w823s3")))) (build-system pyproject-build-system) (arguments (list - ;; XXX: Full integration tests require running database, see projects - ;; CI, unit tests are quite compute-intensive. - ;; - ;; tests: 279 passed, 1 deselected, 105 warnings + ;; tests: 320 passed, 1 skipped, 1 deselected, 120 warnings #:test-flags - #~(list "--ignore=mpi_tests" - ;; OSError: File 'test_simulations/test_tipsy/tiny.000640': - ;; format not understood or does not exist - "--deselect=tests/test_bh_reader.py::test_bhlog") + ;; OSError: File PosixPath('test_simulations/test_tipsy/tiny.000640'): + ;; format not understood or does not exist + #~(list "--deselect=tests/test_bh_reader.py::test_bhlog" ) #:phases #~(modify-phases %standard-phases (add-after 'unpack 'remove-broken-scripts @@ -11045,13 +11041,16 @@ any arbitrary astrometric projection defined in the WCS standard.") ((".*tangos_bh_timelink =.*") "") ;; It looks this script uses not a publicly available module: ;; import Simpy.BlackHoles.orbit. - ((".*tangos_preprocess_bh =.*") ""))))))) + ((".*tangos_preprocess_bh =.*") "")))) + (add-before 'check 'pre-check + (lambda _ + (setenv "HOME" "/tmp") + (setenv "TANGOS_TESTING_DB_BACKEND" "sqlite")))))) (native-inputs (list python-pymysql - python-pynbody-1 + python-pynbody python-pyquery python-pytest - python-setuptools python-webtest python-yt)) (inputs @@ -11063,6 +11062,8 @@ any arbitrary astrometric projection defined in the WCS standard.") python-pastedeploy python-plaster python-plaster-pastedeploy + python-psycopg2 + python-pymysql python-pyparsing python-pyramid python-pyramid-debugtoolbar @@ -11072,7 +11073,7 @@ any arbitrary astrometric projection defined in the WCS standard.") python-repoze-lru python-scipy python-setuptools - python-sqlalchemy + python-sqlalchemy-2 python-tblib python-tqdm python-translationstring
