guix_mirror_bot pushed a commit to branch astro-updates in repository guix.
commit 0092fee4084ce3191c8b0ff3b3547006dabb7c50 Author: Sharlatan Hellseher <[email protected]> AuthorDate: Fri Nov 14 13:25:45 2025 +0000 gnu: python-lenstronomy: Enable more tests and adjust inputs. * gnu/packages/astronomy.scm (python-lenstronomy): [arguments] <test-flags>: Limit the number of parallel tests up to 8; enable more tests. <phases>: Add 'pre-check. [propagated-inputs]: Remove python-astropy, python-cobaya, python-dynesty, python-emcee, python-nautilus-sampler, python-slitronomy, and python-zeus-mcmc; add python-astropy-6. [native-inputs]: Add python-cobaya, python-emcee, python-nestcheck, python-nautilus-sampler, python-dynesty, python-setuptools, python-slitronomy, and python-zeus-mcmc. Change-Id: I4f891ec7418776e69ce8fa2f77d4e6affe9801cf --- gnu/packages/astronomy.scm | 83 ++++++++++++++++++++-------------------------- 1 file changed, 36 insertions(+), 47 deletions(-) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 1c53063468..745a45565b 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -5628,7 +5628,7 @@ astronomical tables (version "1.13.2") (source (origin - (method git-fetch) ;no tests data in the PyPI tarball + (method git-fetch) (uri (git-reference (url "https://github.com/lenstronomy/lenstronomy";) (commit (string-append "v" version)))) @@ -5638,64 +5638,55 @@ astronomical tables (build-system pyproject-build-system) (arguments (list - ;; tests: 1338 passed, 350 warnings + ;; tests: 1452 passed, 2163 warnings #:test-flags - #~(list "--numprocesses" (number->string (parallel-job-count)) - ;; TypeError: SparseSolverBase.__init__() got an - ;; unexpected keyword argument 'num_iter_lens' + #~(list "--numprocesses" (number->string (min 8 (parallel-job-count))) + ;; TypeError: SparseSolverBase.__init__() got an unexpected + ;; keyword argument 'num_iter_lens' "--ignore=test/test_ImSim/test_image_model_pixelbased.py" "-k" (string-join - ;; AttributeError: 'FlatLambdaCDM' object has no attribute '_Ok0' - (list "not test_angular_diameter_distance" - "test_angular_diameter_distance_array" - "test_angular_diameter_distance_z1z2" - "test_geo_shapiro_delay" - "test_interpol" - "test_set_T_ij_stop" - "test_update_source_redshift" - ;; FileNotFoundError: [Errno 2] No such file or - ;; directory: '/tmp/.../coolest_template.json' - "test_full" - "test_load" - "test_pemd" - "test_pemd_via_epl" - "test_raise" - "test_update" - ;; _flapack.error: (liwork>=max(1,10*n)||liwork==-1) - ;; failed for 10th keyword liwork: dsyevr:liwork=1 - "test_sampler" + ;; _flapack.error: (liwork>=max(1,10*n)||liwork==-1) + ;; failed for 10th keyword liwork: dsyevr:liwork=1 + (list "not test_sampler" ;; TypeError: SLIT_Starlets.function_2d() got an ;; unexpected keyword argument 'n_pix_x' - "test_pixelbased_modelling" - ;; XXX: These are precision errors in tests which - ;; need to be checked properly: AssertionError: - ;; Arrays are not almost equal ... - "test_run_fit" - "test_multiplane" - ;; ModuleNotFoundError: No module named - ;; 'astropy.cosmology._utils' - "test_short_and_laconic") - " and not ")))) + "test_pixelbased_modelling") + " and not ")) + #:phases + #~(modify-phases %standard-phases + (add-before 'check 'pre-check + (lambda _ + ;; Tests try to search for JSON in "path = os.getcwd()" and fail + ;; with error: + ;; + ;; FileNotFoundError: [Errno 2] No such file or directory: + ;; '/tmp/<...>/source/coolest_template.json' + (for-each (lambda (file) (copy-file file (basename file))) + (find-files "test/test_Util/test_COOLEST" + "(\\.json|\\.fits)$"))))))) (native-inputs - (list python-colossus - ;; python-nestcheck - ;; python-pymultinest - ;; python-starred-astro + (list python-cobaya + python-colossus python-coolest + python-emcee + python-nestcheck + ;; python-pymultinest ;depends on MultiNest python-pytest - python-pytest-xdist)) + ;; python-starred-astro ;depends on python-jax + python-nautilus-sampler + python-dynesty + python-pytest-xdist + python-setuptools + python-slitronomy + python-zeus-mcmc)) (propagated-inputs - (list python-astropy - python-cobaya + (list python-astropy-6 python-configparser python-corner - python-dynesty - python-emcee python-h5py python-matplotlib python-mpmath python-multiprocess - python-nautilus-sampler python-numba python-numpy python-pyxdg @@ -5703,9 +5694,7 @@ astronomical tables python-schwimmbad python-scikit-image python-scikit-learn - python-scipy - python-slitronomy - python-zeus-mcmc)) + python-scipy)) (home-page "https://github.com/lenstronomy/lenstronomy";) (synopsis "Multi-purpose lens modeling software") (description
