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new 20cf71c022 gnu: r-seqminer: Disable two tests.
20cf71c022 is described below
commit 20cf71c0229c2139df48495af0d2820845af694e
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Wed Nov 26 21:04:33 2025 +0100
gnu: r-seqminer: Disable two tests.
* gnu/packages/cran.scm (r-seqminer)[arguments]: Add phase
'disable-bad-tests.
Change-Id: I939922a57d8cbd1f50c0dababd527cf4e4144b44
---
gnu/packages/cran.scm | 13 +++++++++++++
1 file changed, 13 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 7f7d9e3a0e..c5c5f1aa9f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -51312,6 +51312,19 @@ designs. Broman et al. (2018)
<doi:10.1534/genetics.118.301595>.")
(base32
"15dkh4wfszfrpfpwyhnwj3bnkjfxm17bp0grr1wf4h6zxj0jbkp5"))))
(build-system r-build-system)
+ (arguments
+ (list
+ #:phases
+ '(modify-phases %standard-phases
+ (add-after 'unpack 'disable-bad-tests
+ (lambda _
+ ;; These tests fail with
+ ;; "`failure_message` must be a character vector, not absent."
+ (substitute* "tests/testthat/test-vcf.R"
+ ((".*createSingleChromosomeBCFIndex.*" m)
+ (string-append m "skip('skip')\n"))
+ ((".*createSingleChromosomeVCFIndex.*" m)
+ (string-append m "skip('skip')\n"))))))))
(inputs
(list zlib))
(native-inputs (list r-testthat))
