guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 61396c638bb0a296e375d5a55a703efcff917469
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Thu Nov 13 16:56:21 2025 +0000
gnu: tangos: Update to 1.10.0.
* gnu/packages/astronomy.scm (tangos): Update to 1.10.0.
[arguments] <test-flags>: Enable more tests.
<phases>: Add 'pre-check.
[inputs]: Remove python-sqlalchemy; add python-psycopg2, python-pymysql,
and python-sqlalchemy-2.
[native-inputs]: Remove python-pynbody-1 and python-setuptools; add
python-pynbody.
Change-Id: Ied60d7bee177266d2e8e7f8fe1471a18505e7a8b
---
gnu/packages/astronomy.scm | 29 +++++++++++++++--------------
1 file changed, 15 insertions(+), 14 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index f94d917211..5732d58514 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -11068,7 +11068,7 @@ any arbitrary astrometric projection defined in the WCS
standard.")
(define-public tangos
(package
(name "tangos")
- (version "1.9.1") ;1.10.0+ requires python-pynbody 2+
+ (version "1.10.0")
(source
(origin
(method git-fetch)
@@ -11077,19 +11077,15 @@ any arbitrary astrometric projection defined in the
WCS standard.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0vmjkhmqnr6abg7mybib1gllqbimv4ylgzvwxnsw0kk6cvv4qgl9"))))
+ (base32 "1dbjpmhbz6hqq9r7hpxqsw2pcqfr2g4x35pb0j01w0m902w823s3"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; XXX: Full integration tests require running database, see projects
- ;; CI, unit tests are quite compute-intensive.
- ;;
- ;; tests: 279 passed, 1 deselected, 105 warnings
+ ;; tests: 320 passed, 1 skipped, 1 deselected, 120 warnings
#:test-flags
- #~(list "--ignore=mpi_tests"
- ;; OSError: File 'test_simulations/test_tipsy/tiny.000640':
- ;; format not understood or does not exist
- "--deselect=tests/test_bh_reader.py::test_bhlog")
+ ;; OSError: File PosixPath('test_simulations/test_tipsy/tiny.000640'):
+ ;; format not understood or does not exist
+ #~(list "--deselect=tests/test_bh_reader.py::test_bhlog" )
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'remove-broken-scripts
@@ -11106,13 +11102,16 @@ any arbitrary astrometric projection defined in the
WCS standard.")
((".*tangos_bh_timelink =.*") "")
;; It looks this script uses not a publicly available module:
;; import Simpy.BlackHoles.orbit.
- ((".*tangos_preprocess_bh =.*") "")))))))
+ ((".*tangos_preprocess_bh =.*") ""))))
+ (add-before 'check 'pre-check
+ (lambda _
+ (setenv "HOME" "/tmp")
+ (setenv "TANGOS_TESTING_DB_BACKEND" "sqlite"))))))
(native-inputs
(list python-pymysql
- python-pynbody-1
+ python-pynbody
python-pyquery
python-pytest
- python-setuptools
python-webtest
python-yt))
(inputs
@@ -11124,6 +11123,8 @@ any arbitrary astrometric projection defined in the WCS
standard.")
python-pastedeploy
python-plaster
python-plaster-pastedeploy
+ python-psycopg2
+ python-pymysql
python-pyparsing
python-pyramid
python-pyramid-debugtoolbar
@@ -11133,7 +11134,7 @@ any arbitrary astrometric projection defined in the WCS
standard.")
python-repoze-lru
python-scipy
python-setuptools
- python-sqlalchemy
+ python-sqlalchemy-2
python-tblib
python-tqdm
python-translationstring
