guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 14ab247eceb63ae48c97a778fbaf4842b06c595f
Author: Hugo Buddelmeijer <[email protected]>
AuthorDate: Wed Dec 17 21:29:47 2025 +0100
gnu: python-mappy: Switch to pyproject.
* gnu/packages/bioinformatics.scm (python-mappy):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#test-backend, #test-flags>: Replace check phase with
example (no tests).
[native-inputs]: Add python-setuptools.
Change-Id: I9561de7e0ee94dbd1134c23c608d262169407456
Modified-by: Sharlatan Hellseher <[email protected]>
Signed-off-by: Sharlatan Hellseher <[email protected]>
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++--------
1 file changed, 19 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0fca39a8e6..5b31e175ee 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -18689,15 +18689,26 @@ cases include:
(package
(name "python-mappy")
(version "2.24")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "mappy" version))
- (sha256
- (base32
- "1ycszza87p9qvx8mis9v1hry0ac465x1xcxbsn1k45qlxxrzp8im"))))
- (build-system python-build-system)
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/lh3/minimap2";)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0k658659ivxk2xnyawrfqdhcji6a3xcqdr5a9r5myzb2ivypnjmh"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-backend #~'custom
+ #:test-flags
+ #~(list "-c" (string-append "import mappy;"
+ " print(mappy.revcomp("
+ "mappy.Aligner('test/MT-human.fa')"
+ ".seq('MT_human', 100, 200)))"))))
(native-inputs
- (list python-cython))
+ (list python-cython python-setuptools))
(inputs
(list zlib))
(home-page "https://github.com/lh3/minimap2";)
