guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit 35eee2c2e76557acaf6cbe32258e0564dbe8a33b
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Sun Dec 14 20:46:12 2025 +0000
gnu: python-modin: Update to 0.37.1.
* gnu/packages/python-science.scm (python-modin): Update to 0.37.1.
[arguments] <test-flags>: Rework options.
<phases>: Remove 'loosen-requirements; add 'versioneer, and
'fix-pytest-config; rework {check} phase to include some API tests
scenarios.
[propagated-inputs]: Remove python-cloudpickle and python-s3fs; add
python-fsspec, python-psutil, and python-typing-extensions.
[native-inputs]: Remove python-jinja2, python-lxml, python-matplotlib,
python-msgpack, python-openpyxl, python-psutil, python-pyarrow,
python-pytest-benchmark, python-pytest-cov, python-scipy,
python-sqlalchemy, python-tables, python-tqdm, python-xarray,
python-xlrd, and python-wheel; add python-s3fs, python-setuptools, and
python-versioneer.
Change-Id: I86feaa9f1cd110ed2c430e9816d34da165bccb74
---
gnu/packages/python-science.scm | 102 +++++++++++++++++++++++-----------------
1 file changed, 58 insertions(+), 44 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 2afcaf459b..47d12c3732 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1586,69 +1586,83 @@ spheres, cubes, etc.")
(define-public python-modin
(package
(name "python-modin")
- (version "0.32.0")
+ (version "0.37.1")
(source
(origin
- ;; The archive on pypi does not include all required files.
(method git-fetch)
(uri (git-reference
(url "https://github.com/modin-project/modin";)
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32
- "1vb3iffgspryb6nvwiwdnypb922vkn2yvyzc1y0wwxcb0c0fl78d"))))
+ (base32 "1kqdx3b7sb3895ynypb6swf2jly26xvdghqqrm9ahqps16cn9dx9"))))
(build-system pyproject-build-system)
(arguments
(list
+ ;; tests:
+ ;; - api: 5 passed
+ ;; - dask: 269 passed, 2 skipped, 93 xfailed, 191 warnings
+ ;; - python: 269 passed, 2 skipped, 93 xfailed, 197 warnings
#:test-flags
#~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
- ;; These four tests fail because an expected error is not raised.
- "-k" "not test_binary_bad_broadcast")
+ ;; AssertionError: assert 'array <...>
+ "-k" (string-join
+ (list "not test_repr[100]"
+ "test_repr[size1]"
+ "test_repr[size2]"
+ "test_repr[size3]"
+ "test_repr[size4]"
+ "test_repr[size5]"
+ "test_repr[size6]"
+ "test_repr[size7]"
+ "test_repr[size8]"
+ "test_repr[size9]")
+ " and not ")
+ "modin/tests/numpy")
#:phases
- '(modify-phases %standard-phases
- (add-after 'unpack 'loosen-requirements
- (lambda _
- (substitute* "setup.py"
- ;; Don't depend on a specific version of Pandas.
- (("pandas==") "pandas>="))))
- (replace 'check
- (lambda* (#:key tests? test-flags #:allow-other-keys)
- (when tests?
- (setenv "MODIN_ENGINE" "dask")
- (apply invoke "python" "-m" "pytest"
- "modin/tests/numpy" test-flags)
- (setenv "MODIN_ENGINE" "python")
- (apply invoke "python" "-m" "pytest"
- "modin/tests/numpy" test-flags)))))))
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'versioneer
+ (lambda _
+ (invoke "versioneer" "install")
+ (substitute* "setup.py"
+ (("version=versioneer.get_version\\(),")
+ (string-append "version='" #$version "',")))))
+ (add-after 'unpack 'fix-pytest-config
+ (lambda _
+ (substitute* "setup.cfg"
+ ((" --cov-.*--cov-report=") ""))))
+ (replace 'check
+ (lambda* (#:key tests? test-flags #:allow-other-keys)
+ (when tests?
+ ;; API basic tests
+ (invoke "pytest" "-vv"
+ "modin/tests/test_executions_api.py"
+ "modin/tests/test_headers.py"
+ "modin/tests/core/test_dispatcher.py::test_add_option")
+ ;; More complex engine tests, the complete set up requires
+ ;; database access and AWS credentials, see:
+ ;; <.github/workflows/ci.yml >.
+ (setenv "MODIN_ENGINE" "dask")
+ (apply invoke "pytest" "-vv" test-flags)
+ (setenv "MODIN_ENGINE" "python")
+ (apply invoke "pytest" "-vv" test-flags)))))))
+ (native-inputs
+ (list python-boto3
+ python-pytest
+ python-pytest-xdist
+ python-s3fs
+ python-setuptools
+ python-versioneer))
(propagated-inputs
- (list python-cloudpickle
- python-dask
- python-distributed
+ (list python-fsspec
python-numpy
python-packaging
python-pandas
- python-s3fs))
- (native-inputs
- (list python-boto3
- python-jinja2
- python-lxml
- python-matplotlib
- python-msgpack
- python-openpyxl
python-psutil
- python-pyarrow
- python-pytest
- python-pytest-benchmark
- python-pytest-cov
- python-pytest-xdist
- python-scipy
- python-sqlalchemy
- python-tables
- python-tqdm
- python-xarray
- python-xlrd
- python-wheel))
+ python-typing-extensions
+ ;; [optinoal]
+ python-dask
+ python-distributed))
(home-page "https://github.com/modin-project/modin";)
(synopsis "Make your pandas code run faster")
(description
