guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit 1fa474f76b30f5b136696a749a6a2d6edcc0c343
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Sat Jan 3 16:17:15 2026 +0000
gnu: python-funsor: Update to 0.4.6.
* gnu/packages/machine-learning.scm (python-funsor): Update to 0.4.6.
[source]: Switch to git-fetch providing a fresh version.
[arguments] <test-flags>: Run tests in parallel, supported upstream;
skip more problematic tests.
[propagated-inputs]: Remove python-numpy; add python-numpy-1,
python-pyro-ppl, and python-pytorch.
[native-inputs]: Add python-pytest-xdist.
Change-Id: I6a82951485324e465c93aec07b4f98ef632ebae3
---
gnu/packages/machine-learning.scm | 102 +++++++++++++++++++++++++++++---------
1 file changed, 79 insertions(+), 23 deletions(-)
diff --git a/gnu/packages/machine-learning.scm
b/gnu/packages/machine-learning.scm
index 4a8a94f7d7..ed621a3b95 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -321,36 +321,92 @@ CTranslate2, which is a inference engine for transformer
models.")
(define-public python-funsor
(package
(name "python-funsor")
- (version "0.4.5")
+ (version "0.4.6")
(source
(origin
- (method url-fetch)
- (uri (pypi-uri "funsor" version))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pyro-ppl/funsor";)
+ (commit version)))
+ (file-name (git-file-name name version))
(sha256
- (base32 "0cgysij0dix0fikyz2x4f8jvaskm5s5a04s07chzaz2dw1fpxdq8"))))
+ (base32 "17ys6qbrg2alv6sz9q140gfm2jh4m5417hya7z087jplljqzbf1y"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; tests: 7636 passed, 3859 skipped, 2 deselected, 69 xfailed, 2 xpassed
+ ;; tests: 7665 passed, 3949 skipped, 71 xfailed, 2 xpassed, 8 warnings
#:test-flags
- '(list "-k"
- (string-append
- ;; Disable flaky test
- "not test_integrate_variable[x23-i]"
- ;; XXX This test fails because the length of arguments
- ;; is longer than the length of inputs.
- " and not test_function_of_numeric_array"))))
- (propagated-inputs (list python-makefun python-multipledispatch
- python-numpy python-opt-einsum
- python-typing-extensions))
- (native-inputs (list python-pandas
- python-pillow
- python-pyro-api
- python-pytest
- python-requests
- python-scipy
- python-setuptools
- python-torchvision))
+ #~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
+ ;; XXX: The project has no updates since 2023 and probably not
+ ;; compatible with current Python science stack (NumPy, SciPy,
+ ;; Pandas...).
+ ;;
+ ;; See open issues:
+ ;; <https://github.com/pyro-ppl/funsor/issues/609>
+ ;; <https://github.com/pyro-ppl/funsor/pull/610>
+ ;;
+ ;; TypeError: argument of type 'property' is not iterable
+ "--ignore=test/examples/test_sensor_fusion.py"
+ "--ignore=test/torch/test_provenance.py"
+ ;; The most of the tests fail with error: ValueError: Cannot
+ ;; convert to Funsor: tensor..
+ #$@(map (lambda (test) (string-append "--deselect=test/"
+ test))
+ (list
"pyro/test_convert.py::test_dist_to_funsor_bernoulli"
+
"pyro/test_convert.py::test_dist_to_funsor_categorical"
+
"pyro/test_convert.py::test_dist_to_funsor_independent"
+ "pyro/test_convert.py::test_dist_to_funsor_masked"
+ "pyro/test_convert.py::test_dist_to_funsor_mvn"
+ "pyro/test_convert.py::test_dist_to_funsor_normal"
+ "pyro/test_convert.py::test_funsor_to_cat_and_mvn"
+ "pyro/test_convert.py::test_funsor_to_mvn"
+
"pyro/test_convert.py::test_matrix_and_mvn_to_funsor"
+
"pyro/test_convert.py::test_matrix_and_mvn_to_funsor_diag"
+ "pyro/test_convert.py::test_mvn_to_funsor"
+ "pyro/test_convert.py::test_tensor_funsor_tensor"
+
"pyro/test_distribution.py::test_categorical_log_prob"
+
"pyro/test_distribution.py::test_categorical_sample"
+
"pyro/test_hmm.py::test_discrete_categorical_log_prob"
+
"pyro/test_hmm.py::test_discrete_diag_normal_log_prob"
+ "pyro/test_hmm.py::test_discrete_mvn_log_prob"
+ "pyro/test_hmm.py::test_discrete_normal_log_prob"
+ "pyro/test_hmm.py::test_gaussian_hmm_log_prob"
+
"pyro/test_hmm.py::test_gaussian_hmm_log_prob_null_dynamics"
+ "pyro/test_hmm.py::test_gaussian_mrf_log_prob"
+
"pyro/test_hmm.py::test_switching_linear_hmm_log_prob"
+
"pyro/test_hmm.py::test_switching_linear_hmm_log_prob_alternating"
+ "pyro/test_hmm.py::test_switching_linear_hmm_shape"
+ "pyroapi/test_pyroapi.py::test_generate_data"
+ "pyroapi/test_pyroapi.py::test_generate_data_plate"
+ "pyroapi/test_pyroapi.py::test_local_param_ok"
+ "pyroapi/test_pyroapi.py::test_mean_field_ok"
+
"pyroapi/test_pyroapi.py::test_nested_plate_plate_ok"
+
"pyroapi/test_pyroapi.py::test_nonempty_model_empty_guide_ok"
+ "pyroapi/test_pyroapi.py::test_optimizer"
+ "pyroapi/test_pyroapi.py::test_plate_ok"
+
"test_tensor.py::test_function_of_numeric_array")))))
+ (native-inputs
+ (list python-pandas
+ python-pillow
+ python-pyro-api
+ python-pytest
+ python-pytest-xdist
+ python-requests
+ python-scipy
+ python-setuptools
+ python-torchvision))
+ (propagated-inputs
+ (list python-makefun
+ python-multipledispatch
+ python-numpy-1
+ python-opt-einsum
+ python-typing-extensions
+ ;; [optional]
+ ;; python-jax
+ ;; python-jaxlib
+ ;; python-numpyro
+ python-pyro-ppl
+ python-pytorch))
(home-page "https://github.com/pyro-ppl/funsor";)
(synopsis "Tensor-like library for functions and distributions")
(description
