guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit c67818b1e93028d905c831dc642709d67a32a9c6
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Tue Jan 6 21:57:25 2026 +0000
gnu: python-lifelines: Simplify tests.
* gnu/packages/statistics.scm (python-lifelines):
[arguments] <test-flags>: Rework skipped tests to improve determinism of
them.
[native-inputs]: Remove python-pytest-xdist and python-wheel; add
python-jinja2.
Change-Id: Ia468acbfff3714662620e1196f4ea8fe72a308df
---
gnu/packages/statistics.scm | 26 +++++++-------------------
1 file changed, 7 insertions(+), 19 deletions(-)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 0c64e9c64e..b367e44ee4 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1386,31 +1386,19 @@ new data from those PDFs.")
(build-system pyproject-build-system)
(arguments
(list
+ ;; tests: 144 passed, 75 skipped, 1 deselected, 11 warnings
#:test-flags
- ;; NOTE: Tests take 15-25min to complete on 16 threads and much longer
- ;; in single one, so enabling --numprocesses option.
- #~(list "lifelines/tests"
- "--numprocesses" (number->string (min 16 (parallel-job-count)))
- "-k" (string-join
- (list
- ;; This accuracy test fails because 0.012 is not < 0.01.
- "not test_weibull_with_delayed_entries"
- ;; These checks are too expensive, last for ages.
- "test_univariate_fitters_ok_if_given_timedelta"
-
"test_predict_methods_returns_a_scalar_or_a_array_depending_on_input"
- "test_cumulative_density_ci_is_ordered_correctly"
- (string-append
- "test_univariate_fitters_okay_if_"
- "given_boolean_col_with_object_dtype"))
- " and not "))))
+ ;; Tests are not deterministic and compute intense.
+ #~(list "--ignore=lifelines/tests/test_estimation.py"
+ ;; Not equal to tolerance rtol=0.0001, atol=0
+ "--deselect=lifelines/tests/test_npmle.py::test_mice_scipy")))
(native-inputs
(list python-dill
python-flaky
+ python-jinja2
python-joblib
python-pytest
- python-pytest-xdist ;see NOTE above
- python-setuptools
- python-wheel))
+ python-setuptools))
(propagated-inputs
(list python-autograd
python-autograd-gamma
