guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit 6c652d02d741a9e7411ecbd49b1d9779b5bcde7f
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Tue Jan 6 20:53:20 2026 +0000
gnu: python-pandas-stubs: Update to 2.3.3.251219.
* gnu/packages/python-science.scm (python-pandas-stubs): Update to
2.3.3.251219.
[arguments]: Drop all but 2 skipped tests.
[propagated-inputs]: Add python-numpy.
[native-inputs]: Remove python-tables, which, xclip,
xorg-server-for-tests, and xsel; add python-beautifulsoup4,
python-fsspec, python-html5lib, python-jinja2, python-loguru,
python-mypy, python-numexpr, python-openpyxl, python-typing-extensions,
python-xlrd, python-xlsxwriter, and tzdata-for-tests.
Change-Id: I7b7b85c1ce9b1e575069a79321db4ff515372942
---
gnu/packages/python-science.scm | 123 ++++++++++++++++++----------------------
1 file changed, 55 insertions(+), 68 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index a3f8d41d16..584cb74030 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -4072,86 +4072,73 @@ doing practical, real world data analysis in Python.")
(name "python-pandas-stubs")
;; The versioning follows that of Pandas and uses the date of the
;; python-pandas-stubs release.
- (version "2.2.3.241126")
+ (version "2.3.3.251219")
(source
(origin
- ;; No tests in the PyPI tarball.
(method git-fetch)
(uri (git-reference
- (url "https://github.com/pandas-dev/pandas-stubs";)
- (commit (string-append "v" version))))
+ (url "https://github.com/pandas-dev/pandas-stubs";)
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0xbvin2l7h8vq9g24n4n2l49pdxbi15qghq7zkhh567p3pbmvsyb"))))
+ (base32 "1xh753wv5dbc59qp7fas323181mlblvhqmd9a4g7zzhaa2mxmzqs"))))
(build-system pyproject-build-system)
(arguments
(list
- #:test-flags #~(list "--ignore=tests/test_io.py" ;requires
python-calamine
- "-k"
- (string-append
- ;; The python-pyarrow package in Guix is built
- ;; with ORC integration, but these tests fail with
- ;; an abort in ORC because a timezone file is not
- ;; in the expected location:
- ;; https://github.com/apache/arrow/issues/40633
- "not test_orc"
- " and not test_orc_path"
- " and not test_orc_buffer"
- " and not test_orc_columns"
- " and not test_orc_bytes"
- " and not test_all_read_without_lxml_dtype_backend"
-
- ;; Apparently "numpy.bool_" is not the same as the
- ;; expected "bool".
- " and not test_timedelta_cmp"
- " and not test_timedelta_cmp_rhs"
- " and not test_timestamp_cmp"
- " and not test_timestamp_eq_ne_rhs"))
- #:phases
- '(modify-phases %standard-phases
- ;; We cannot yet upgrade numpy to 1.26 because numba needs numpy
- ;; >1.24.
- (add-after 'unpack 'relax-requirements
- (lambda _
- (substitute* "pyproject.toml"
- (("numpy = \\{ version = \">=1.26.0\", python = \"<3.13\" \\}")
- "numpy = { version = \">=1.23.0\", python = \"<3.13\" }"))))
- (add-before 'check 'prepare-x
- (lambda _
- (system "Xvfb &")
- (setenv "DISPLAY" ":0")
- ;; xsel needs to write a log file.
- (setenv "HOME" (getcwd)))))))
- (propagated-inputs (list python-types-pytz))
- ;; Add python-fastparquet to native inputs once it has been packaged. Its
- ;; tests will be skipped for now.
- (native-inputs (list python-lxml
- python-matplotlib
- python-odfpy
- python-pandas
- python-poetry-core
- python-pyarrow
- python-pyreadstat
- python-pytest
- python-scipy
- python-sqlalchemy-2
- python-tables
- python-tabulate
- python-xarray
- ;; Needed to test clipboard support.
- which
- xclip
- xorg-server-for-tests
- xsel))
+ ;; tests: 1619 passed, 12 skipped, 7 deselected
+ #:test-flags
+ #~(list
+ ;; ImportError: Missing optional dependency 'python-calamine'.
+ "--deselect=tests/test_io.py::test_read_excel"
+ "--deselect=tests/test_io.py::test_excel_reader")))
+ (native-inputs
+ (list python-beautifulsoup4
+ python-fsspec
+ python-html5lib
+ python-jinja2
+ python-loguru
+ python-lxml
+ python-matplotlib
+ python-mypy
+ python-numexpr
+ python-odfpy
+ python-openpyxl
+ python-pandas
+ python-poetry-core
+ python-pyarrow
+ python-pyreadstat
+ python-pytest
+ python-scipy
+ python-sqlalchemy-2
+ python-tabulate
+ python-typing-extensions
+ python-xarray
+ python-xlrd
+ python-xlsxwriter
+ ;; Not packaged yet
+ ;;
+ ;; python-calamine
+ ;; python-poethepoet
+ ;; python-pyarrow-stubs
+ ;; python-pyrefly
+ ;; python-python-calamine
+ ;; python-pyxlsb
+ ;; python-scipy-stubs
+ ;; python-ty
+ ;; python-types-python-dateutil
+ tzdata-for-tests))
+ (propagated-inputs
+ (list python-numpy
+ python-types-pytz))
(home-page "https://pandas.pydata.org";)
(synopsis "Type annotations for pandas")
(description
- "This package contains public type stubs for @code{python-pandas},
-following the convention of providing stubs in a separate package, as
-specified in @acronym{PEP, Python Enhancement Proposal} 561. The stubs cover
-the most typical use cases of @code{python-pandas}. In general, these stubs
-are narrower than what is possibly allowed by @code{python-pandas}, but follow
-a convention of suggesting best recommended practices for using
+ "This package contains public type stubs for @code{python-pandas},
following
+the convention of providing stubs in a separate package, as specified in
+@acronym{PEP, Python Enhancement Proposal} 561. The stubs cover the most
+typical use cases of @code{python-pandas}. In general, these stubs are
+narrower than what is possibly allowed by @code{python-pandas}, but follow a
+convention of suggesting best recommended practices for using
@code{python-pandas}.")
(license license:bsd-3)))
