guix_mirror_bot pushed a commit to branch next-master
in repository guix.
commit 46472cea00e1afee080b6c9fc6acac57369971b5
Author: Nicolas Graves <[email protected]>
AuthorDate: Tue Jan 6 14:05:57 2026 +0100
gnu: gemmi: Switch to pyproject.
* gnu/packages/chemistry.scm (gemmi):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.
Change-Id: Id2bd46050b2820945d5a9d90e17e1c5d1e61c40e
Signed-off-by: Sharlatan Hellseher <[email protected]>
---
gnu/packages/chemistry.scm | 89 +++++++++++++++++++++++-----------------------
1 file changed, 45 insertions(+), 44 deletions(-)
diff --git a/gnu/packages/chemistry.scm b/gnu/packages/chemistry.scm
index 7d15852207..e798301430 100644
--- a/gnu/packages/chemistry.scm
+++ b/gnu/packages/chemistry.scm
@@ -1049,56 +1049,57 @@ integrals for Gaussian type functions.")
(build-system cmake-build-system)
(arguments
(list
- #:modules '((guix build cmake-build-system)
- (guix build utils)
- ((guix build python-build-system)
- #:select (site-packages)))
#:imported-modules (append %cmake-build-system-modules
- '((guix build python-build-system)))
+ %pyproject-build-system-modules)
+ #:modules
+ '((guix build cmake-build-system)
+ (guix build utils)
+ ((guix build pyproject-build-system) #:select (site-packages)))
#:configure-flags
#~(list "-DUSE_PYTHON=ON"
(string-append "-DPYTHON_INSTALL_DIR="
(site-packages %build-inputs %outputs)))
#:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'patch-includes
- (lambda _
- (substitute* (list "src/json.cpp"
- "src/sprintf.cpp"
- "include/gemmi/dirwalk.hpp"
- "include/gemmi/cif.hpp"
- "include/gemmi/json.hpp"
- "python/gemmi.cpp"
- "python/serial.h"
- "include/gemmi/atof.hpp"
- "include/gemmi/numb.hpp"
- "include/gemmi/fourier.hpp")
- (("<stb/stb_sprintf.h>") "<stb_sprintf.h>")
- (("\"third_party/tinydir.h\"") "<tinydir.h>")
- (("\"third_party/tao/pegtl.hpp\"") "<tao/pegtl.hpp>")
- (("\"\\.\\./third_party/sajson.h\"") "<sajson.h>")
- (("\"gemmi/third_party/tao/pegtl/parse_error.hpp\"")
- "<tao/pegtl/parse_error.hpp>")
- (("\"third_party/fast_float.h\"")
- "<fast_float/fast_float.h>")
- (("\"third_party/pocketfft_hdronly.h\"")
- "<pocketfft_hdronly.h>")
- (("\"\\.\\./third_party/serializer.h\"")
- "<zpp/serializer.h>"))))
- (add-after 'unpack 'change-bin-prefix
- (lambda _
- (substitute* "CMakeLists.txt"
- (("install\\(TARGETS program DESTINATION bin\\)")
- (string-append
- "install(TARGETS program DESTINATION "
- #$output:bin "/bin)")))))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (with-directory-excursion "../source"
- (setenv "PYTHONPATH" "../build/py")
- (invoke "python3" "-m" "unittest" "discover" "-v"
- "-s" "tests"))))))))
+ (with-extensions (list (pyproject-guile-json))
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'patch-includes
+ (lambda _
+ (substitute* (list "src/json.cpp"
+ "src/sprintf.cpp"
+ "include/gemmi/dirwalk.hpp"
+ "include/gemmi/cif.hpp"
+ "include/gemmi/json.hpp"
+ "python/gemmi.cpp"
+ "python/serial.h"
+ "include/gemmi/atof.hpp"
+ "include/gemmi/numb.hpp"
+ "include/gemmi/fourier.hpp")
+ (("<stb/stb_sprintf.h>") "<stb_sprintf.h>")
+ (("\"third_party/tinydir.h\"") "<tinydir.h>")
+ (("\"third_party/tao/pegtl.hpp\"") "<tao/pegtl.hpp>")
+ (("\"\\.\\./third_party/sajson.h\"") "<sajson.h>")
+ (("\"gemmi/third_party/tao/pegtl/parse_error.hpp\"")
+ "<tao/pegtl/parse_error.hpp>")
+ (("\"third_party/fast_float.h\"")
+ "<fast_float/fast_float.h>")
+ (("\"third_party/pocketfft_hdronly.h\"")
+ "<pocketfft_hdronly.h>")
+ (("\"\\.\\./third_party/serializer.h\"")
+ "<zpp/serializer.h>"))))
+ (add-after 'unpack 'change-bin-prefix
+ (lambda _
+ (substitute* "CMakeLists.txt"
+ (("install\\(TARGETS program DESTINATION bin\\)")
+ (string-append
+ "install(TARGETS program DESTINATION "
+ #$output:bin "/bin)")))))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (with-directory-excursion "../source"
+ (setenv "PYTHONPATH" "../build/py")
+ (invoke "python3" "-m" "unittest" "discover" "-v"
+ "-s" "tests")))))))))
(inputs (list python zlib))
(native-inputs
(list fast-float
