guix_mirror_bot pushed a commit to branch next-master
in repository guix.
commit c5a9e72b8f88f8995ef2fe6e32eab1f1f10b8ca2
Author: Nicolas Graves <[email protected]>
AuthorDate: Tue Jan 6 23:55:06 2026 +0100
gnu: python-pypairix: Fix package.
The package was missing binaries, which were not produced because
CFLAGS were effectively ignored.
* gnu/packages/bioinformatics.scm (python-pypairix)[arguments]
<#:phases>: Add phase 'respect-CFLAGS.
Change-Id: Id982af5f5a0c43c6fc20e109a5419913e47882e9
Signed-off-by: Sharlatan Hellseher <[email protected]>
---
gnu/packages/bioinformatics.scm | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5392e2c4e8..e1ec20e387 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -20246,6 +20246,11 @@ allowing the insertion of arbitrary types into the
tree.")
(list
#:phases
#~(modify-phases %standard-phases
+ (add-after 'unpack 'respect-CFLAGS
+ (lambda _
+ (substitute* "src/Makefile"
+ (("CFLAGS=")
+ "CFLAGS?="))))
(add-before 'build 'relax-gcc-14-strictness
(lambda _
(setenv "CFLAGS"
