guix_mirror_bot pushed a commit to branch next-master
in repository guix.
commit db380b0d3d733d83261c74078568ff206d749066
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Tue Jan 13 00:24:29 2026 +0000
gnu: python-pyjanitor: Update to 0.32.5.
* gnu/packages/python-science.scm (python-pyjanitor): Update to 0.32.5.
[arguments] <test-flags>: Rework ignored/skipped tests.
[propagated-inputs]: Remove python-requests.
[native-inputs]: Add python-openpyxl and python-requests.
[synopsys]: pandas->Pandas.
Change-Id: I12f3f1f6ab84d63882325103e8c729d44656c97c
---
gnu/packages/python-science.scm | 53 ++++++++++++++++++++++-------------------
1 file changed, 28 insertions(+), 25 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 4ad823389e..fc6eaa1941 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -4211,42 +4211,46 @@ production-critical data pipelines or reproducible
research settings. With
(define-public python-pyjanitor
(package
(name "python-pyjanitor")
- (version "0.31.0")
+ (version "0.32.5")
(source
(origin
- ;; The build requires the mkdocs directory for the description in
- ;; setup.py. This is not included in the PyPI tarball.
(method git-fetch)
(uri (git-reference
(url "https://github.com/pyjanitor-devs/pyjanitor";)
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "06y6fvydrsjqdpbd20icd194693x127qhb19fgw248jfjyg5ga44"))))
+ (base32 "058w2mq42v55xkqv3cvxry53sj2qh1v64ad4gc5qb8a3is453a07"))))
(build-system pyproject-build-system)
;; Pyjanitor has an extensive test suite. For quick debugging, the tests
;; marked turtle can be skipped using "-m" "not turtle".
(arguments
(list
- ;; tests: 1042 passed, 2 skipped, 2 deselected, 45 xfailed, 6 xpassed,
- ;; 735 warnings
+ ;; tests: 1030 passed, 2 skipped, 42 xfailed, 6 xpassed, 594 warnings
#:test-flags
;; The tests take quite long, so consider adding the "-n" line and
;; adding python-pytest-xdist to the native-inputs when testing.
- ;; However, the tests are not deterministic when ran with -n, so
- ;; disable again before committing.
- #~(list ;; "-n" (number->string (parallel-job-count))
+ ;; However, the tests are not deterministic, enen they are enabled in
+ ;; project's CI (.github/workflows/tests.yml), when ran with "-n,
+ ;; --numprocesses" , so disable again before committing.
+ #~(list ;; "--numprocesses" (number->string (min 8 (parallel-job-count)))
;; Test files are not included.
"--ignore=tests/io/test_read_csvs.py"
;; Polars has not been packaged yet.
- "--ignore=tests/polars"
+ "--ignore=tests/polars/"
;; PySpark has not been packaged yet.
- "--ignore=tests/spark/functions/test_clean_names_spark.py"
- "--ignore=tests/spark/functions/test_update_where_spark.py"
+ "--ignore=tests/spark/"
;; Tries to connect to the internet.
"-k" (string-append "not test_is_connected"
;; Test files are not included.
- " and not test_read_commandline_bad_cmd"))
+ " and not test_read_commandline_bad_cmd"
+ ;; XXX: Fatal Python error: Segmentation
fault
+ " and not test_maccs_keys_fingerprint"
+ " and not test_morgan_fingerprint_counts"
+ " and not test_morgan_fingerprint_bits"
+ ;; AssertionError: DataFrame.iloc[:, 1]
+ ;; (column name="cities") are different
+ " and not test_various_sorted"))
#:phases
#~(modify-phases %standard-phases
(add-before 'check 'set-env-ci
@@ -4254,25 +4258,24 @@ production-critical data pipelines or reproducible
research settings. With
;; Some tests are skipped if the JANITOR_CI_MACHINE
;; variable is not set.
(setenv "JANITOR_CI_MACHINE" "1"))))))
- ;; TODO: Remove python-requests and inject its target data to make the
- ;; package behaviour reproducible.
(propagated-inputs (list python-multipledispatch
python-natsort
python-pandas-flavor
- python-requests
python-scipy
- ;; Optional imports.
- python-biopython ;biology submodule
- python-unyt)) ;engineering submodule
- (native-inputs (list python-pytest
+ ;; [optional]
+ python-biopython
+ python-unyt))
+ (native-inputs (list python-numba
+ python-openpyxl
+ python-pytest
;;python-pytest-xdist ;only for -n when testing
+ ;; TODO: Remove python-requests and inject its target
+ ;; data to make the package behaviour reproducible.
+ python-requests
python-setuptools
- ;; Optional imports. We do not propagate them due to
- ;; their size.
- python-numba ;speedup of joins
- rdkit)) ;chemistry submodule
+ rdkit))
(home-page "https://github.com/pyjanitor-devs/pyjanitor";)
- (synopsis "Tools for cleaning and transforming pandas DataFrames")
+ (synopsis "Tools for cleaning and transforming Pandas DataFrames")
(description
"@code{pyjanitor} provides a set of data cleaning routines for
@code{pandas} DataFrames. These routines extend the method chaining API
