guix_mirror_bot pushed a change to branch r-team
in repository guix.
discard 425e18f777 gnu: r-zarrarray: Update to 1.0-2.3cc3e6a.
discard 9593714f0a gnu: r-pizzarr: Update to 0.1.0-2.5f47057.
discard 7a787eb2a9 gnu: r-qs: Skip another test.
discard a0a28e9863 gnu: r-zarrdataframe: Update to 0.0.0-2.84c7db2.
discard a45f0e91fa gnu: Add r-rarr.
discard 3af3ed1fd5 gnu: r-signac: Update to 1.16.0-1.f5a8411.
discard 7733c8c030 gnu: r-msnid: Disable one test.
discard 9a9131ddd7 gnu: r-tximeta: Update to 1.28.1.
discard 984c87d7e6 gnu: r-bayesspace: Update to 1.20.2.
discard ef9e24d335 gnu: r-mscoreutils: Update to 1.22.1.
discard 31e9c2f62a gnu: r-sparsearray: Update to 1.10.8.
discard f0d72aeafa gnu: r-h5mread: Update to 1.2.1.
discard 43ad05b641 gnu: r-s4arrays: Update to 1.10.1.
discard 51b4b7bf6b gnu: r-bioccheck: Update to 1.46.3.
discard 63cb9a1e8f gnu: r-ucsc-utils: Update to 1.6.1.
discard 89ee890dd0 gnu: r-variancepartition: Update to 1.40.1.
discard 7b265753a9 gnu: r-flowworkspace: Update to 4.22.1.
discard 016c8aa3c2 gnu: r-ggcyto: Update to 1.38.1.
discard f38314b6c7 gnu: r-flowcore: Update to 2.22.1.
discard d4fe128e74 gnu: r-wppi: Update to 1.18.0.
discard 0a8bafba74 gnu: r-yapsa: Update to 1.36.1.
discard 7bdda95a8b gnu: r-clusterprofiler: Update to 4.18.4.
discard 24121fc077 gnu: r-enrichplot: Update to 1.30.4.
discard 47afe38f91 gnu: r-fgsea: Update to 1.36.2.
discard 8ace6357f0 gnu: r-ggtree: Update to 4.0.4.
discard 34601e4b60 gnu: r-graph: Update to 1.88.1.
discard 691db7e0ce gnu: r-zellkonverter: Update to 1.20.1.
discard a85a098e99 gnu: r-tximport: Update to 1.38.2.
discard 801187e016 gnu: r-systempiper: Update to 2.16.3.
discard 003fb33aaf gnu: r-spectra: Update to 1.20.1.
discard cddd622432 gnu: r-transcriptr: Update to 1.38.3.
discard 5395a2cc33 gnu: r-tcgautils: Update to 1.30.2.
discard 9839d0e2d5 gnu: r-sesame: Update to 1.28.1.
discard 92a29d08a2 gnu: r-rtracklayer: Update to 1.70.1.
discard 3ee7c27e8e gnu: r-rhdf5: Update to 2.54.1.
discard 668e60b584 gnu: r-rcy3: Update to 2.30.1.
discard 284602ffe8 gnu: r-gsva: Update to 2.4.4.
discard ded19298c2 gnu: r-genomicranges: Update to 1.62.1.
discard 1358c36005 gnu: r-genomeinfodb: Update to 1.46.2.
discard ec726c803d gnu: r-enhancedvolcano: Update to 1.28.2.
discard f5b622749f gnu: r-edger: Update to 4.8.2.
discard 97046fa1aa gnu: r-immapex: Update to 1.4.3.
discard 10e17f0d9b gnu: r-escape: Update to 2.6.2.
discard 8d387544dc gnu: r-atena: Update to 1.16.1.
discard 4bb36d4822 gnu: r-anvil: Update to 1.22.3.
discard 3c2901cbae gnu: r-systempiperdata: Update to 2.14.2.
discard 340e41948b gnu: r-reactome-db: Update to 1.95.0.
discard 05180d69d0 gnu: r-txdbmaker: Update to 1.6.2.
discard f11879d664 gnu: r-screpertoire: Update to 2.6.2.
discard 1ab74e168e gnu: Add r-tidydr.
discard a4e16ca427 gnu: r-tidyr: Update to 1.3.2.
discard f1bf4c0c97 gnu: r-rcpparmadillo: Update to 15.2.3-1.
discard 2eaee6e1d7 gnu: r-tibble: Update to 3.3.1.
discard c0e872fabe gnu: r-rlang: Update to 1.1.7.
discard 3cac58f1a0 gnu: r-tesseract: Update to 5.2.4.
discard a5df4ddce0 gnu: r-vgam: Update to 1.1-14.
discard 3238ab16c2 gnu: r-delaporte: Update to 8.4.3.
discard a46cf099ff gnu: r-stars: Update to 0.7-0.
discard 6473034ed1 gnu: r-highlight: Update to 0.5.2.
discard 36ccc05b96 gnu: r-mlr3tuning: Update to 1.5.1.
discard fd1dfc194d gnu: r-mlr3learners: Update to 0.14.0.
discard 10fba59cdd gnu: r-mlr3: Update to 1.3.0.
discard 6c7465c26e gnu: r-seurat: Update to 5.4.0.
discard a728a7510e gnu: r-seuratobject: Update to 5.3.0.
discard 917200cdc4 gnu: r-qtl: Update to 1.74.
discard 05afd64510 gnu: r-lsa: Update to 0.73.4.
discard 0589e86f93 gnu: r-infer: Update to 1.1.0.
discard 340f20a98a gnu: r-parsnip: Update to 1.4.1.
discard 514904d963 gnu: r-tidypredict: Update to 1.0.1.
discard a1a5ae785e gnu: r-nanoarrow: Update to 0.7.0-2.
discard d25ca58585 gnu: r-clusterr: Update to 1.3.6.
discard 8e674de508 gnu: r-spatstat-utils: Update to 3.2-1.
discard 8632e1e9e0 gnu: r-shapforxgboost: Update to 0.2.0.
discard 6bb639fbc1 gnu: r-projpred: Update to 2.10.0.
discard 78b035c1ba gnu: r-kendall: Update to 2.2.2.
discard 371778db59 gnu: r-rstantools: Update to 2.6.0.
discard fca62c5e91 gnu: r-rsconnect: Update to 1.7.0.
discard f045b15514 gnu: r-butcher: Update to 0.4.0.
discard 7a6d301c1e gnu: r-polycor: Update to 0.8-2.
discard d6df1ea41d gnu: r-forecast: Update to 9.0.0.
discard 531daac3a2 gnu: r-knn-covertree: Update to 1.1.
discard 8b6287c9c3 gnu: r-anthropometry: Update to 1.21.
discard b1c9c82b35 gnu: r-imager: Update to 1.0.8.
discard 08d5cae9f7 gnu: r-hdrcde: Update to 3.5.0.
discard 3fd2a9b8b0 gnu: r-r-devices: Update to 2.17.3.
discard c853b1b0b2 gnu: r-lifecycle: Update to 1.0.5.
discard f125e64ed9 gnu: r-terra: Update to 1.8-93.
discard e11d823abd gnu: r-leidenbase: Update to 0.1.36.
discard c536dc516c gnu: r-blme: Update to 1.0-7.
discard 0779b36e2f gnu: r-sctransform: Update to 0.4.3.
discard f79a6ec5d7 gnu: r-arrow: Update to 22.0.0.1.
discard 6574fca141 gnu: r-gggenes: Update to 0.6.0.
discard bb063963c9 gnu: r-bookdown: Update to 0.46.
discard a6d17e8a9a gnu: r-bqtl: Update to 1.0-39.
discard fe611f272f gnu: r-pegas: Update to 1.4.
discard abf6da3dea gnu: r-lavaan: Update to 0.6-21.
discard ca1c96ef10 gnu: r-msir: Update to 1.4.
discard c8f77014fb gnu: r-testit: Update to 0.15.
discard d9c98bec04 gnu: r-shinybs: Update to 0.63.0.
discard ba50863e8c gnu: r-future-apply: Update to 1.20.1.
discard 8071433a22 gnu: r-spam: Update to 2.11-3.
discard cedb27ae4d gnu: r-gmisc: Update to 3.1.0.
discard 49f72075b3 gnu: r-rncl: Update to 0.8.8.
discard df080873bd gnu: r-sparsevctrs: Update to 0.3.5.
discard bbfaa4f409 gnu: r-tidytree: Update to 0.4.7.
discard c11151bb35 gnu: r-tm: Update to 0.7-17.
discard abe00912c9 gnu: r-fmesher: Update to 0.6.1.
discard 2aee295119 gnu: r-afex: Update to 1.5-1.
discard 0fb57313e0 gnu: r-mvabund: Update to 4.2.8.
discard 5162f2f039 gnu: r-gert: Update to 2.3.1.
discard c330adad66 gnu: r-ggeffects: Update to 2.3.2.
discard 067826b4da gnu: r-tmb: Update to 1.9.19.
discard ac7958fd08 gnu: r-bayesplot: Update to 1.15.0.
discard e7782b44a9 gnu: r-emmeans: Update to 2.0.1.
discard e84280b4ea gnu: r-svdialogs: Update to 1.1.2.
discard fde012b08b gnu: r-dofuture: Update to 1.1.3.
discard bdb9c818c1 gnu: r-superlearner: Update to 2.0-40.
discard 341fa98140 gnu: r-gam: Update to 1.22-7.
discard 2dec228113 gnu: r-abcrf: Update to 2.0.
discard e078b58cf9 gnu: r-nodbi: Update to 0.14.0.
discard c7b2f3d581 gnu: r-insight: Update to 1.4.4.
discard 3e3463081d gnu: r-officer: Update to 0.7.2.
discard 8b9f6277a3 gnu: r-pupillometryr: Update to 0.0.7.
discard 6b96b8b575 gnu: r-itsadug: Update to 2.5.
discard 9a6e3a19d5 gnu: r-ggsci: Update to 4.2.0.
discard 53cf132ae9 gnu: r-ggseqlogo: Update to 0.2.2.
discard 8d2c692694 gnu: r-fsa: Update to 0.10.1.
discard daa0493f90 gnu: r-arules: Update to 1.7.13.
discard ba6610bfd9 gnu: r-simdesign: Update to 2.22.
discard 29d8e4a82c gnu: r-fbasics: Update to 4052.98.
discard 39f98ff257 gnu: r-tseries: Update to 0.10-59.
discard 3e080daa7f gnu: r-statnet-common: Update to 4.13.0.
discard 4f3584baa3 gnu: r-nanoparquet: Update to 0.4.3.
discard 4e9c45e8e7 gnu: r-venndiagram: Update to 1.8.2.
discard eafa7c6b3a gnu: r-trycatchlog: Update to 1.3.3.
discard 986ffd8ae0 gnu: r-mice: Update to 3.19.0.
discard 5ebc231612 gnu: r-ordinal: Update to 2025.12-29.
discard 357d3ceff7 gnu: r-statsexpressions: Update to 1.7.2.
discard ed584e77a4 gnu: r-broom: Update to 1.0.11.
discard 0ac37ba30c gnu: r-knitrbootstrap: Update to 1.0.4.
discard 046c916725 gnu: r-knitr: Update to 1.51.
discard 878c2728b5 gnu: r-rmumps: Update to 5.2.1-36.
discard 407338a385 gnu: r-lamw: Update to 2.2.6.
discard 66ae832611 gnu: r-proxy: Update to 0.4-29.
discard e8823bb5c2 gnu: r-circlize: Update to 0.4.17.
discard 6a85b57943 gnu: r-audio: Update to 0.1-12.
discard 67d89ab178 gnu: r-rcppspdlog: Update to 0.0.24.
discard 9891a718f7 gnu: r-rcppcctz: Update to 0.2.14.
discard 0e17ca102b gnu: r-ggtangle: Update to 0.1.0.
discard f59047a504 gnu: r-mbess: Update to 4.9.42.
discard a472f6eaaf gnu: r-fastglm: Update to 0.0.4.
discard 7694d6b8ce gnu: r-hmisc: Update to 5.2-5.
discard 852882b64c gnu: r-selectr: Update to 0.5-1.
discard eeaa00c0f2 gnu: r-secretbase: Update to 1.1.0.
discard 6b3e7c6f88 gnu: r-astsa: Update to 2.4.
discard 886a8027cb gnu: r-mclogit: Update to 0.9.15.
discard ad55ee1a27 gnu: r-ga: Update to 3.2.5.
discard 0c00a84bd2 gnu: r-plumber: Update to 1.3.2.
discard 48e4b5963f gnu: r-plotmo: Update to 3.7.0.
discard 79240d4b5c gnu: r-plotfunctions: Update to 1.5.
discard 49ac31f97a gnu: r-oompabase: Update to 3.2.11.
discard 8a5bbad51b gnu: r-ggvenndiagram: Update to 1.5.7.
discard 807cacf443 gnu: r-zoo: Update to 1.8-15.
discard 1a653ac0be gnu: r-climatol: Update to 4.4-0.
discard bc13a7040e gnu: r-climaemet: Update to 1.5.0.
discard 4e6053cf31 gnu: r-robslopes: Update to 1.1.4.
discard c84d7aa2cd gnu: r-ggstatsplot: Update to 0.13.4.
discard f72dbc4a90 gnu: r-ggstats: Update to 0.12.0.
discard 7f50894646 gnu: r-ggfittext: Update to 0.10.3.
discard 1f91df0251 gnu: r-earth: Update to 5.3.5.
discard 84d8c6c51d gnu: r-data-table: Update to 1.18.0.
discard 9e219ea810 gnu: r-collapse: Update to 2.1.6.
discard 2c78ee3495 gnu: r-cardx: Update to 0.3.1.
discard f7b7f7fbe3 gnu: r-abn: Update to 3.1.13.
discard ad53a81d43 gnu: r-metap: Update to 1.13.
discard e2de2896fc gnu: r-mutoss: Update to 0.1-14.
discard 2bc8c5f8e8 gnu: r-valr: Update to 0.9.1.
discard 551a86ea2f gnu: r-cpp11bigwig: Update to 0.1.3.
discard ba8f477d79 gnu: r-bh: Update to 1.90.0-1.
discard f6370f1dfd gnu: r-testthat: Update to 3.3.2.
discard 91001996bd gnu: r-duckdb: Update to 1.4.3.
discard e5d8c18f36 gnu: r-shinystan: Update to 2.7.0.
discard b371e5640a gnu: r-rmapshaper: Add update note.
discard cc743e2e60 gnu: r-glmmtmb: Disable one test.
discard 71dee40009 gnu: r-vcr: Update to 2.1.0.
discard a312461f34 gnu: r-maxlik: Update to 1.5-2.2.
discard e3e2c5b0eb gnu: r-microbiomestat: Update to 1.3.
discard 42097ab216 gnu: r-paletteer: Update to 1.7.0.
discard 147a845610 gnu: r-futile-logger: Update to 1.4.9.
discard a79f93299e gnu: r-yulab-utils: Update to 0.2.3.
discard 51c8bdd61a gnu: r-aster: Update to 1.3-7.
discard 229cdf6e55 gnu: r-yaml: Update to 2.3.12.
discard 43b52a5df3 gnu: r-wk: Update to 0.9.5.
discard 392f19549f gnu: r-later: Update to 1.4.5.
discard ba931cdc0f gnu: r-redland: Update to 1.0.17-19.
discard 02fc9862f6 gnu: r-loo: Update to 2.9.0.
discard 39c227d837 gnu: r-litedown: Update to 0.9.
discard 5ca2e9a8d9 gnu: r-ctrdata: Update to 1.25.1.
discard 71e5f5debb gnu: r-rcpp: Update to 1.1.1.
discard 022fdbaad3 gnu: r-feather: Update to 0.4.0.
discard ad0e80245c gnu: r-geos: Update to 0.2.5.
discard f94b19400c gnu: r-htmltools: Update to 0.5.9.
discard 9af27bebdb gnu: r-httr2: Update to 1.2.2.
discard 0b779fddbd gnu: r-purrr: Update to 1.2.1.
discard 67612e18e1 gnu: r-e1071: Update to 1.7-17.
discard 943f3f3ee6 gnu: r-dbscan: Update to 1.2.4.
discard 09c41004a8 gnu: r-extradistr: Update to 1.10.0.1.
discard a4c5822e7b gnu: r-catdata: Update to 1.2.5.
discard 706d53f813 gnu: r-roi: Update to 1.0-2.
discard 3ee273272c gnu: r-latex2exp: Update to 0.9.8.
discard 34d39aa15a gnu: r-xfun: Update to 0.55.
discard a080609ec0 gnu: r-timeseries: Update to 4052.112.
discard 66485236b9 gnu: r-vim: Update to 7.0.0.
discard 44ceba06a1 gnu: r-isoband: Update to 0.3.0.
discard c2c4111159 gnu: r-reformulas: Update to 0.4.3.1.
discard 57034fb89e gnu: r-parallelly: Update to 1.46.1.
discard 4c81193b08 gnu: r-rlrsim: Update to 3.1-9.
discard 63e45e2523 gnu: r-rsqlite: Update to 2.4.5.
discard a162a5d02b gnu: r-exactextractr: Update to 0.10.1.
discard 2ecf5cd502 gnu: r-vroom: Update to 1.6.7.
discard d810abcc21 gnu: r-parsnip: Update to 1.4.0.
discard e726730a5e gnu: r-tidypredict: Update to 1.0.0.
discard db3c964985 gnu: r-spatstat: Update to 3.5-0.
discard ddcd58864c gnu: r-spatstat-linnet: Update to 3.4-0.
discard 0a41d7f0c0 gnu: r-patrick: Update to 0.3.1.
discard 479e5b95b2 gnu: r-xgboost: Update to 3.1.2.1.
discard b35603654d gnu: r-xml2: Update to 1.5.1.
discard 327db0a7e6 gnu: r-text2vec: Update to 0.6.6.
discard 281804cb56 gnu: r-yulab-utils: Update to 0.2.2.
discard 8e13dc8bd5 gnu: r-performance: Update to 0.15.3.
discard 0dfb0dfb15 gnu: r-doby: Update to 4.7.1.
discard 77449a3dad gnu: r-piton: Update to 1.0.1.
discard 3ff83e5aa7 gnu: r-getoptlong: Update to 1.1.0.
discard ffc66412f1 gnu: r-globaloptions: Update to 0.1.3.
discard 12f33ede3e gnu: r-bindr: Update to 0.1.3.
discard ce4ae9b496 gnu: r-ggtangle: Update to 0.0.9.
discard c91b8ae380 gnu: r-mirai: Update to 2.5.3.
discard 260aa5f532 gnu: r-ggpmisc: Update to 0.6.3.
discard 265f47256c gnu: r-lme4: Update to 1.1-38.
discard 2032fcced1 gnu: r-bestnormalize: Update to 1.9.2.
discard abce46be42 gnu: r-runner: Update to 0.4.5.
discard 1f32b5cae1 gnu: r-rpresto: Update to 1.4.8.
discard cbecaaba80 gnu: r-gplots: Update to 3.3.0.
discard e4d17736da gnu: r-ggthemes: Update to 5.2.0.
discard 552d1c2aef gnu: r-ggbeeswarm: Update to 0.7.3.
discard 8f044d36a6 gnu: r-cards: Update to 0.7.1.
discard 556c18cfbc gnu: r-box: Update to 1.2.1.
discard f06bca11bd gnu: r-yaml: Update to 2.3.11.
discard aafc7c6d8a gnu: r-testthat: Update to 3.3.1.
discard e9615d96f2 gnu: Add r-nlstools.
discard e9924ddb9d gnu: Add r-qvcalc.
add 4c64a2d9f4 gnu: mariadb: Fix max nproc in tests.
add fc6d5efe61 gnu: vcmi: Update dependency on tbb.
add ac6390b4b3 gnu: python-openturns: Update dependency on tbb.
add 1a276a4b60 gnu: easyeffects: Update dependency on tbb.
add af764a1cd3 gnu: libgit2: Set default version to 1.9.
add b412c8a0e8 gnu: Replace libgit2-1.9 with default libgit2 where
possible.
add 9464df1c10 gnu: Replace libgit2-1.8 with default libgit2 where possible
add e0d35f0dc4 gnu: sqlitebrowser: Update to 3.13.1.
add a328cb168c gnu: sqlitebrowser: Use system nlohmann-json.
add 517288e5f5 gnu: python-pygit2: Rename to python-pygit2-1.11.
add 244db1217a gnu: python-pygit2-1.18: Rename to python-pygit2.
add e66e14cbd4 gnu: patman: Update input.
add 0e9dae7787 gnu: gallia: Update input.
add 1dab3b2292 gnu: python-pypeit: Update input
add 9b87e309e1 gnu: offlate: Update input.
new a11cdbce89 gnu: Add r-qvcalc.
new cdc6ef1b03 gnu: Add r-nlstools.
new 23fa24caa3 gnu: r-testthat: Update to 3.3.1.
new 535b39fd5d gnu: r-yaml: Update to 2.3.11.
new 803a99046b gnu: r-box: Update to 1.2.1.
new 837c273678 gnu: r-cards: Update to 0.7.1.
new d60c8dad63 gnu: r-ggbeeswarm: Update to 0.7.3.
new d41b6165c8 gnu: r-ggthemes: Update to 5.2.0.
new 34858420e0 gnu: r-gplots: Update to 3.3.0.
new ee2c2a5421 gnu: r-rpresto: Update to 1.4.8.
new edccccbb5f gnu: r-runner: Update to 0.4.5.
new 304270a817 gnu: r-bestnormalize: Update to 1.9.2.
new 4907f353c1 gnu: r-lme4: Update to 1.1-38.
new af61ed05b4 gnu: r-ggpmisc: Update to 0.6.3.
new 4b3ec07946 gnu: r-mirai: Update to 2.5.3.
new 80f134c18c gnu: r-ggtangle: Update to 0.0.9.
new 00fb05c92d gnu: r-bindr: Update to 0.1.3.
new 7fc346f936 gnu: r-globaloptions: Update to 0.1.3.
new 560d9a0307 gnu: r-getoptlong: Update to 1.1.0.
new b53936ad91 gnu: r-piton: Update to 1.0.1.
new d3dadee241 gnu: r-doby: Update to 4.7.1.
new bb0fb6c2ac gnu: r-performance: Update to 0.15.3.
new 28604b2259 gnu: r-yulab-utils: Update to 0.2.2.
new e3950287c3 gnu: r-text2vec: Update to 0.6.6.
new 8024d77bde gnu: r-xml2: Update to 1.5.1.
new 48170114a4 gnu: r-xgboost: Update to 3.1.2.1.
new aa25119965 gnu: r-patrick: Update to 0.3.1.
new a9255fa117 gnu: r-spatstat-linnet: Update to 3.4-0.
new 8760c92100 gnu: r-spatstat: Update to 3.5-0.
new 598eb63dba gnu: r-tidypredict: Update to 1.0.0.
new efd2d188b1 gnu: r-parsnip: Update to 1.4.0.
new 391dc9c439 gnu: r-vroom: Update to 1.6.7.
new dc7ec35bc1 gnu: r-exactextractr: Update to 0.10.1.
new 4c31ec2f6c gnu: r-rsqlite: Update to 2.4.5.
new 591265b58f gnu: r-rlrsim: Update to 3.1-9.
new 97d6170309 gnu: r-parallelly: Update to 1.46.1.
new d5ac24e6f5 gnu: r-reformulas: Update to 0.4.3.1.
new 3d7e71890f gnu: r-isoband: Update to 0.3.0.
new b4d5a76094 gnu: r-vim: Update to 7.0.0.
new 424a750df0 gnu: r-timeseries: Update to 4052.112.
new 22802dc924 gnu: r-xfun: Update to 0.55.
new 0e1d1a3320 gnu: r-latex2exp: Update to 0.9.8.
new 86dbeef35c gnu: r-roi: Update to 1.0-2.
new 311d956c22 gnu: r-catdata: Update to 1.2.5.
new b6b9fe963c gnu: r-extradistr: Update to 1.10.0.1.
new 4e883e5a0a gnu: r-dbscan: Update to 1.2.4.
new 4a69bab720 gnu: r-e1071: Update to 1.7-17.
new ccf7122a6a gnu: r-purrr: Update to 1.2.1.
new e0a174c4d4 gnu: r-httr2: Update to 1.2.2.
new 346ac2a615 gnu: r-htmltools: Update to 0.5.9.
new b986bdc5cd gnu: r-geos: Update to 0.2.5.
new a64f8d887b gnu: r-feather: Update to 0.4.0.
new 8a02ea9f55 gnu: r-rcpp: Update to 1.1.1.
new 9b9f6925a8 gnu: r-ctrdata: Update to 1.25.1.
new bb4a9c88ee gnu: r-litedown: Update to 0.9.
new 1c1ff786b4 gnu: r-loo: Update to 2.9.0.
new f1b91f6180 gnu: r-redland: Update to 1.0.17-19.
new a95b42418f gnu: r-later: Update to 1.4.5.
new 6fdfb07242 gnu: r-wk: Update to 0.9.5.
new 4c2265e044 gnu: r-yaml: Update to 2.3.12.
new 1557cba8f9 gnu: r-aster: Update to 1.3-7.
new 2aec763c9c gnu: r-yulab-utils: Update to 0.2.3.
new 100abc6dfe gnu: r-futile-logger: Update to 1.4.9.
new eecff33e81 gnu: r-paletteer: Update to 1.7.0.
new 3e2caf490a gnu: r-microbiomestat: Update to 1.3.
new a6af4bcfdb gnu: r-maxlik: Update to 1.5-2.2.
new 29101f6bbe gnu: r-vcr: Update to 2.1.0.
new 1695dcc9c5 gnu: r-glmmtmb: Disable one test.
new 3ddba29916 gnu: r-rmapshaper: Add update note.
new 3c55d0e5ca gnu: r-shinystan: Update to 2.7.0.
new 1370c115af gnu: r-duckdb: Update to 1.4.3.
new e48a214780 gnu: r-testthat: Update to 3.3.2.
new 5fd651fb20 gnu: r-bh: Update to 1.90.0-1.
new 5b834a697e gnu: r-cpp11bigwig: Update to 0.1.3.
new baf367d6c2 gnu: r-valr: Update to 0.9.1.
new 67305ff2eb gnu: r-mutoss: Update to 0.1-14.
new 1f33882d26 gnu: r-metap: Update to 1.13.
new a7c78ed8d6 gnu: r-abn: Update to 3.1.13.
new 750f32d637 gnu: r-cardx: Update to 0.3.1.
new 0f47cef4f7 gnu: r-collapse: Update to 2.1.6.
new 96fac5322f gnu: r-data-table: Update to 1.18.0.
new 4977a8fd42 gnu: r-earth: Update to 5.3.5.
new 78ebd4d05e gnu: r-ggfittext: Update to 0.10.3.
new 31d7a2f240 gnu: r-ggstats: Update to 0.12.0.
new e787ba3552 gnu: r-ggstatsplot: Update to 0.13.4.
new 8e7379a752 gnu: r-robslopes: Update to 1.1.4.
new 346c0bb728 gnu: r-climaemet: Update to 1.5.0.
new 748145aa17 gnu: r-climatol: Update to 4.4-0.
new dfb1c58cb0 gnu: r-zoo: Update to 1.8-15.
new 7bd5e83c3a gnu: r-ggvenndiagram: Update to 1.5.7.
new a4b602bcfc gnu: r-oompabase: Update to 3.2.11.
new 6ad5ed5a7d gnu: r-plotfunctions: Update to 1.5.
new a2d46b454e gnu: r-plotmo: Update to 3.7.0.
new 2f2ea4b6fd gnu: r-plumber: Update to 1.3.2.
new 9c4521e536 gnu: r-ga: Update to 3.2.5.
new 35843e9c57 gnu: r-mclogit: Update to 0.9.15.
new bbe0f9489b gnu: r-astsa: Update to 2.4.
new 67098d34a9 gnu: r-secretbase: Update to 1.1.0.
new 9e831a0146 gnu: r-selectr: Update to 0.5-1.
new f8b6ee0fcd gnu: r-hmisc: Update to 5.2-5.
new 8c5ed84dc0 gnu: r-fastglm: Update to 0.0.4.
new 8cae644641 gnu: r-mbess: Update to 4.9.42.
new 73439af6f0 gnu: r-ggtangle: Update to 0.1.0.
new a0d2cf0675 gnu: r-rcppcctz: Update to 0.2.14.
new c70174e943 gnu: r-rcppspdlog: Update to 0.0.24.
new 7b73bb7d4c gnu: r-audio: Update to 0.1-12.
new ec7bf1d4c4 gnu: r-circlize: Update to 0.4.17.
new a1a46bf36d gnu: r-proxy: Update to 0.4-29.
new ca7af876d8 gnu: r-lamw: Update to 2.2.6.
new 7fa9d11940 gnu: r-rmumps: Update to 5.2.1-36.
new 81dbdd3a34 gnu: r-knitr: Update to 1.51.
new 4a323338f3 gnu: r-knitrbootstrap: Update to 1.0.4.
new 524241efc7 gnu: r-broom: Update to 1.0.11.
new 5e28dc4e18 gnu: r-statsexpressions: Update to 1.7.2.
new f54c7288c6 gnu: r-ordinal: Update to 2025.12-29.
new 9df9cd1c00 gnu: r-mice: Update to 3.19.0.
new 4b60fe8ac5 gnu: r-trycatchlog: Update to 1.3.3.
new 868ff8a9f0 gnu: r-venndiagram: Update to 1.8.2.
new b367910a44 gnu: r-nanoparquet: Update to 0.4.3.
new add66b50ca gnu: r-statnet-common: Update to 4.13.0.
new 89ec4c4733 gnu: r-tseries: Update to 0.10-59.
new f849392f9f gnu: r-fbasics: Update to 4052.98.
new 52e3ee4bcc gnu: r-simdesign: Update to 2.22.
new 8405c4e3e3 gnu: r-arules: Update to 1.7.13.
new e615c2594f gnu: r-fsa: Update to 0.10.1.
new 4319f81d10 gnu: r-ggseqlogo: Update to 0.2.2.
new 0fc94b4712 gnu: r-ggsci: Update to 4.2.0.
new 456ad227d9 gnu: r-itsadug: Update to 2.5.
new 286d28800b gnu: r-pupillometryr: Update to 0.0.7.
new 843b968231 gnu: r-officer: Update to 0.7.2.
new 13e8f07979 gnu: r-insight: Update to 1.4.4.
new cb7c67fbca gnu: r-nodbi: Update to 0.14.0.
new a54277dc01 gnu: r-abcrf: Update to 2.0.
new c0c38f6463 gnu: r-gam: Update to 1.22-7.
new d3b397f77e gnu: r-superlearner: Update to 2.0-40.
new 3fbacf4dce gnu: r-dofuture: Update to 1.1.3.
new e05be36747 gnu: r-svdialogs: Update to 1.1.2.
new 93d53f712c gnu: r-emmeans: Update to 2.0.1.
new eb491c9826 gnu: r-bayesplot: Update to 1.15.0.
new 123288e991 gnu: r-tmb: Update to 1.9.19.
new 6c905e2749 gnu: r-ggeffects: Update to 2.3.2.
new dab0a8663f gnu: r-gert: Update to 2.3.1.
new 39fadbf292 gnu: r-mvabund: Update to 4.2.8.
new be3a926711 gnu: r-afex: Update to 1.5-1.
new ad07c9973d gnu: r-fmesher: Update to 0.6.1.
new 195a862708 gnu: r-tm: Update to 0.7-17.
new bab9fbcaf6 gnu: r-tidytree: Update to 0.4.7.
new d9852fd2d2 gnu: r-sparsevctrs: Update to 0.3.5.
new c329f646c9 gnu: r-rncl: Update to 0.8.8.
new 6ceb013d7a gnu: r-gmisc: Update to 3.1.0.
new da2996af4a gnu: r-spam: Update to 2.11-3.
new 14a94cb760 gnu: r-future-apply: Update to 1.20.1.
new dae4c8379c gnu: r-shinybs: Update to 0.63.0.
new cd00baf3d5 gnu: r-testit: Update to 0.15.
new 858516f5f5 gnu: r-msir: Update to 1.4.
new 6011a56b23 gnu: r-lavaan: Update to 0.6-21.
new 2f406c8e75 gnu: r-pegas: Update to 1.4.
new de2772bca5 gnu: r-bqtl: Update to 1.0-39.
new ea37b1de30 gnu: r-bookdown: Update to 0.46.
new 8cf7f56f16 gnu: r-gggenes: Update to 0.6.0.
new 1279b5217b gnu: r-arrow: Update to 22.0.0.1.
new 285b2261cd gnu: r-sctransform: Update to 0.4.3.
new 534578b91c gnu: r-blme: Update to 1.0-7.
new 7d4970ae1a gnu: r-leidenbase: Update to 0.1.36.
new 1408a30123 gnu: r-terra: Update to 1.8-93.
new 52379c4629 gnu: r-lifecycle: Update to 1.0.5.
new 96b66966a9 gnu: r-r-devices: Update to 2.17.3.
new a1579e2971 gnu: r-hdrcde: Update to 3.5.0.
new 638b1bb9fc gnu: r-imager: Update to 1.0.8.
new ed72099372 gnu: r-anthropometry: Update to 1.21.
new e317d2951f gnu: r-knn-covertree: Update to 1.1.
new 618307a671 gnu: r-forecast: Update to 9.0.0.
new ce53d737ed gnu: r-polycor: Update to 0.8-2.
new 561929c467 gnu: r-butcher: Update to 0.4.0.
new f618ed96de gnu: r-rsconnect: Update to 1.7.0.
new 3be26136c2 gnu: r-rstantools: Update to 2.6.0.
new 2106a158f8 gnu: r-kendall: Update to 2.2.2.
new 34c1495642 gnu: r-projpred: Update to 2.10.0.
new 50b4181680 gnu: r-shapforxgboost: Update to 0.2.0.
new 03e24b1b53 gnu: r-spatstat-utils: Update to 3.2-1.
new 9399c830c3 gnu: r-clusterr: Update to 1.3.6.
new 07466d7b65 gnu: r-nanoarrow: Update to 0.7.0-2.
new 2cd4388551 gnu: r-tidypredict: Update to 1.0.1.
new 25843b45f1 gnu: r-parsnip: Update to 1.4.1.
new 910602d238 gnu: r-infer: Update to 1.1.0.
new c7753a5992 gnu: r-lsa: Update to 0.73.4.
new 1b38161f62 gnu: r-qtl: Update to 1.74.
new 6731812dc1 gnu: r-seuratobject: Update to 5.3.0.
new 76a3c443da gnu: r-seurat: Update to 5.4.0.
new 35e4ff55a9 gnu: r-mlr3: Update to 1.3.0.
new 760ba1a7e3 gnu: r-mlr3learners: Update to 0.14.0.
new d4978274e3 gnu: r-mlr3tuning: Update to 1.5.1.
new 23f99c3636 gnu: r-highlight: Update to 0.5.2.
new 1bd841f56f gnu: r-stars: Update to 0.7-0.
new 3a5ae03aec gnu: r-delaporte: Update to 8.4.3.
new 0e339943f2 gnu: r-vgam: Update to 1.1-14.
new 56976cd8da gnu: r-tesseract: Update to 5.2.4.
new 757b034ae1 gnu: r-rlang: Update to 1.1.7.
new 3f8a3dce17 gnu: r-tibble: Update to 3.3.1.
new ce4ff67a7a gnu: r-rcpparmadillo: Update to 15.2.3-1.
new ba60167deb gnu: r-tidyr: Update to 1.3.2.
new 87a7e1b04f gnu: Add r-tidydr.
new 58f11f095f gnu: r-screpertoire: Update to 2.6.2.
new 6979217b74 gnu: r-txdbmaker: Update to 1.6.2.
new 20a347d485 gnu: r-reactome-db: Update to 1.95.0.
new cb1f63dc56 gnu: r-systempiperdata: Update to 2.14.2.
new 4b641681ea gnu: r-anvil: Update to 1.22.3.
new 8be37d1f6b gnu: r-atena: Update to 1.16.1.
new 4bc507b223 gnu: r-escape: Update to 2.6.2.
new d4d21ee762 gnu: r-immapex: Update to 1.4.3.
new 366659e740 gnu: r-edger: Update to 4.8.2.
new 13d3fe2470 gnu: r-enhancedvolcano: Update to 1.28.2.
new aaa1be5693 gnu: r-genomeinfodb: Update to 1.46.2.
new 4248ff2b8f gnu: r-genomicranges: Update to 1.62.1.
new 5758c0e5a7 gnu: r-gsva: Update to 2.4.4.
new da6e7806a7 gnu: r-rcy3: Update to 2.30.1.
new 34ac8891cc gnu: r-rhdf5: Update to 2.54.1.
new d718826e4d gnu: r-rtracklayer: Update to 1.70.1.
new 20a5da97ba gnu: r-sesame: Update to 1.28.1.
new 383ec5c838 gnu: r-tcgautils: Update to 1.30.2.
new 40d8da0937 gnu: r-transcriptr: Update to 1.38.3.
new b733e5b8b9 gnu: r-spectra: Update to 1.20.1.
new 600173e189 gnu: r-systempiper: Update to 2.16.3.
new 0fae782004 gnu: r-tximport: Update to 1.38.2.
new 3b384ad1c0 gnu: r-zellkonverter: Update to 1.20.1.
new 42e5c40232 gnu: r-graph: Update to 1.88.1.
new a442c66336 gnu: r-ggtree: Update to 4.0.4.
new fcc324e730 gnu: r-fgsea: Update to 1.36.2.
new b9643dfea1 gnu: r-enrichplot: Update to 1.30.4.
new 1e95d1a43e gnu: r-clusterprofiler: Update to 4.18.4.
new d197fc8aee gnu: r-yapsa: Update to 1.36.1.
new 8f9a1ee94b gnu: r-wppi: Update to 1.18.0.
new fb3cafb4ba gnu: r-flowcore: Update to 2.22.1.
new 08f82b527b gnu: r-ggcyto: Update to 1.38.1.
new 65eb42a025 gnu: r-flowworkspace: Update to 4.22.1.
new 0992bfcbed gnu: r-variancepartition: Update to 1.40.1.
new 511bbf5ef7 gnu: r-ucsc-utils: Update to 1.6.1.
new 4db761b0cc gnu: r-bioccheck: Update to 1.46.3.
new 09f7283e05 gnu: r-s4arrays: Update to 1.10.1.
new 974987104c gnu: r-h5mread: Update to 1.2.1.
new d2f843c5e0 gnu: r-sparsearray: Update to 1.10.8.
new 0cbdac26fe gnu: r-mscoreutils: Update to 1.22.1.
new 4a0a08cb0f gnu: r-bayesspace: Update to 1.20.2.
new d27c6c608b gnu: r-tximeta: Update to 1.28.1.
new 4ad9f98d20 gnu: r-msnid: Disable one test.
new ae7086e8a4 gnu: r-signac: Update to 1.16.0-1.f5a8411.
new cf3753d23a gnu: Add r-rarr.
new b60e2087eb gnu: r-zarrdataframe: Update to 0.0.0-2.84c7db2.
new 7050106472 gnu: r-qs: Skip another test.
new 8e578c2031 gnu: r-pizzarr: Update to 0.1.0-2.5f47057.
new 1faa6dab6c gnu: r-zarrarray: Update to 1.0-2.3cc3e6a.
This update added new revisions after undoing existing revisions.
That is to say, some revisions that were in the old version of the
branch are not in the new version. This situation occurs
when a user --force pushes a change and generates a repository
containing something like this:
* -- * -- B -- O -- O -- O (425e18f777)
\
N -- N -- N refs/heads/r-team (1faa6dab6c)
You should already have received notification emails for all of the O
revisions, and so the following emails describe only the N revisions
from the common base, B.
Any revisions marked "omit" are not gone; other references still
refer to them. Any revisions marked "discard" are gone forever.
The 251 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
gnu/packages/audio.scm | 4 ++--
gnu/packages/databases.scm | 32 +++++++++++++++++++++++---------
gnu/packages/games.scm | 5 +++--
gnu/packages/guile.scm | 2 +-
gnu/packages/jami.scm | 2 +-
gnu/packages/kde-utils.scm | 2 +-
gnu/packages/package-management.scm | 2 +-
gnu/packages/python-xyz.scm | 10 +++++-----
gnu/packages/ruby-xyz.scm | 2 +-
gnu/packages/statistics.scm | 5 +++--
gnu/packages/version-control.scm | 4 ++--
gnu/tests/audio.scm | 1 +
12 files changed, 44 insertions(+), 27 deletions(-)
