guix_mirror_bot pushed a change to branch r-team
in repository guix.
discard 1faa6dab6c gnu: r-zarrarray: Update to 1.0-2.3cc3e6a.
discard 8e578c2031 gnu: r-pizzarr: Update to 0.1.0-2.5f47057.
discard 7050106472 gnu: r-qs: Skip another test.
discard b60e2087eb gnu: r-zarrdataframe: Update to 0.0.0-2.84c7db2.
discard cf3753d23a gnu: Add r-rarr.
discard ae7086e8a4 gnu: r-signac: Update to 1.16.0-1.f5a8411.
discard 4ad9f98d20 gnu: r-msnid: Disable one test.
discard d27c6c608b gnu: r-tximeta: Update to 1.28.1.
discard 4a0a08cb0f gnu: r-bayesspace: Update to 1.20.2.
discard 0cbdac26fe gnu: r-mscoreutils: Update to 1.22.1.
discard d2f843c5e0 gnu: r-sparsearray: Update to 1.10.8.
discard 974987104c gnu: r-h5mread: Update to 1.2.1.
discard 09f7283e05 gnu: r-s4arrays: Update to 1.10.1.
discard 4db761b0cc gnu: r-bioccheck: Update to 1.46.3.
discard 511bbf5ef7 gnu: r-ucsc-utils: Update to 1.6.1.
discard 0992bfcbed gnu: r-variancepartition: Update to 1.40.1.
discard 65eb42a025 gnu: r-flowworkspace: Update to 4.22.1.
discard 08f82b527b gnu: r-ggcyto: Update to 1.38.1.
discard fb3cafb4ba gnu: r-flowcore: Update to 2.22.1.
discard 8f9a1ee94b gnu: r-wppi: Update to 1.18.0.
discard d197fc8aee gnu: r-yapsa: Update to 1.36.1.
discard 1e95d1a43e gnu: r-clusterprofiler: Update to 4.18.4.
discard b9643dfea1 gnu: r-enrichplot: Update to 1.30.4.
discard fcc324e730 gnu: r-fgsea: Update to 1.36.2.
discard a442c66336 gnu: r-ggtree: Update to 4.0.4.
discard 42e5c40232 gnu: r-graph: Update to 1.88.1.
discard 3b384ad1c0 gnu: r-zellkonverter: Update to 1.20.1.
discard 0fae782004 gnu: r-tximport: Update to 1.38.2.
discard 600173e189 gnu: r-systempiper: Update to 2.16.3.
discard b733e5b8b9 gnu: r-spectra: Update to 1.20.1.
discard 40d8da0937 gnu: r-transcriptr: Update to 1.38.3.
discard 383ec5c838 gnu: r-tcgautils: Update to 1.30.2.
discard 20a5da97ba gnu: r-sesame: Update to 1.28.1.
discard d718826e4d gnu: r-rtracklayer: Update to 1.70.1.
discard 34ac8891cc gnu: r-rhdf5: Update to 2.54.1.
discard da6e7806a7 gnu: r-rcy3: Update to 2.30.1.
discard 5758c0e5a7 gnu: r-gsva: Update to 2.4.4.
discard 4248ff2b8f gnu: r-genomicranges: Update to 1.62.1.
discard aaa1be5693 gnu: r-genomeinfodb: Update to 1.46.2.
discard 13d3fe2470 gnu: r-enhancedvolcano: Update to 1.28.2.
discard 366659e740 gnu: r-edger: Update to 4.8.2.
discard d4d21ee762 gnu: r-immapex: Update to 1.4.3.
discard 4bc507b223 gnu: r-escape: Update to 2.6.2.
discard 8be37d1f6b gnu: r-atena: Update to 1.16.1.
discard 4b641681ea gnu: r-anvil: Update to 1.22.3.
discard cb1f63dc56 gnu: r-systempiperdata: Update to 2.14.2.
discard 20a347d485 gnu: r-reactome-db: Update to 1.95.0.
discard 6979217b74 gnu: r-txdbmaker: Update to 1.6.2.
discard 58f11f095f gnu: r-screpertoire: Update to 2.6.2.
discard 87a7e1b04f gnu: Add r-tidydr.
discard ba60167deb gnu: r-tidyr: Update to 1.3.2.
discard ce4ff67a7a gnu: r-rcpparmadillo: Update to 15.2.3-1.
discard 3f8a3dce17 gnu: r-tibble: Update to 3.3.1.
discard 757b034ae1 gnu: r-rlang: Update to 1.1.7.
discard 56976cd8da gnu: r-tesseract: Update to 5.2.4.
discard 0e339943f2 gnu: r-vgam: Update to 1.1-14.
discard 3a5ae03aec gnu: r-delaporte: Update to 8.4.3.
discard 1bd841f56f gnu: r-stars: Update to 0.7-0.
discard 23f99c3636 gnu: r-highlight: Update to 0.5.2.
discard d4978274e3 gnu: r-mlr3tuning: Update to 1.5.1.
discard 760ba1a7e3 gnu: r-mlr3learners: Update to 0.14.0.
discard 35e4ff55a9 gnu: r-mlr3: Update to 1.3.0.
discard 76a3c443da gnu: r-seurat: Update to 5.4.0.
discard 6731812dc1 gnu: r-seuratobject: Update to 5.3.0.
discard 1b38161f62 gnu: r-qtl: Update to 1.74.
discard c7753a5992 gnu: r-lsa: Update to 0.73.4.
discard 910602d238 gnu: r-infer: Update to 1.1.0.
discard 25843b45f1 gnu: r-parsnip: Update to 1.4.1.
discard 2cd4388551 gnu: r-tidypredict: Update to 1.0.1.
discard 07466d7b65 gnu: r-nanoarrow: Update to 0.7.0-2.
discard 9399c830c3 gnu: r-clusterr: Update to 1.3.6.
discard 03e24b1b53 gnu: r-spatstat-utils: Update to 3.2-1.
discard 50b4181680 gnu: r-shapforxgboost: Update to 0.2.0.
discard 34c1495642 gnu: r-projpred: Update to 2.10.0.
discard 2106a158f8 gnu: r-kendall: Update to 2.2.2.
discard 3be26136c2 gnu: r-rstantools: Update to 2.6.0.
discard f618ed96de gnu: r-rsconnect: Update to 1.7.0.
discard 561929c467 gnu: r-butcher: Update to 0.4.0.
discard ce53d737ed gnu: r-polycor: Update to 0.8-2.
discard 618307a671 gnu: r-forecast: Update to 9.0.0.
discard e317d2951f gnu: r-knn-covertree: Update to 1.1.
discard ed72099372 gnu: r-anthropometry: Update to 1.21.
discard 638b1bb9fc gnu: r-imager: Update to 1.0.8.
discard a1579e2971 gnu: r-hdrcde: Update to 3.5.0.
discard 96b66966a9 gnu: r-r-devices: Update to 2.17.3.
discard 52379c4629 gnu: r-lifecycle: Update to 1.0.5.
discard 1408a30123 gnu: r-terra: Update to 1.8-93.
discard 7d4970ae1a gnu: r-leidenbase: Update to 0.1.36.
discard 534578b91c gnu: r-blme: Update to 1.0-7.
discard 285b2261cd gnu: r-sctransform: Update to 0.4.3.
discard 1279b5217b gnu: r-arrow: Update to 22.0.0.1.
discard 8cf7f56f16 gnu: r-gggenes: Update to 0.6.0.
discard ea37b1de30 gnu: r-bookdown: Update to 0.46.
discard de2772bca5 gnu: r-bqtl: Update to 1.0-39.
discard 2f406c8e75 gnu: r-pegas: Update to 1.4.
discard 6011a56b23 gnu: r-lavaan: Update to 0.6-21.
discard 858516f5f5 gnu: r-msir: Update to 1.4.
discard cd00baf3d5 gnu: r-testit: Update to 0.15.
discard dae4c8379c gnu: r-shinybs: Update to 0.63.0.
discard 14a94cb760 gnu: r-future-apply: Update to 1.20.1.
discard da2996af4a gnu: r-spam: Update to 2.11-3.
discard 6ceb013d7a gnu: r-gmisc: Update to 3.1.0.
discard c329f646c9 gnu: r-rncl: Update to 0.8.8.
discard d9852fd2d2 gnu: r-sparsevctrs: Update to 0.3.5.
discard bab9fbcaf6 gnu: r-tidytree: Update to 0.4.7.
discard 195a862708 gnu: r-tm: Update to 0.7-17.
discard ad07c9973d gnu: r-fmesher: Update to 0.6.1.
discard be3a926711 gnu: r-afex: Update to 1.5-1.
discard 39fadbf292 gnu: r-mvabund: Update to 4.2.8.
discard dab0a8663f gnu: r-gert: Update to 2.3.1.
discard 6c905e2749 gnu: r-ggeffects: Update to 2.3.2.
discard 123288e991 gnu: r-tmb: Update to 1.9.19.
discard eb491c9826 gnu: r-bayesplot: Update to 1.15.0.
discard 93d53f712c gnu: r-emmeans: Update to 2.0.1.
discard e05be36747 gnu: r-svdialogs: Update to 1.1.2.
discard 3fbacf4dce gnu: r-dofuture: Update to 1.1.3.
discard d3b397f77e gnu: r-superlearner: Update to 2.0-40.
discard c0c38f6463 gnu: r-gam: Update to 1.22-7.
discard a54277dc01 gnu: r-abcrf: Update to 2.0.
discard cb7c67fbca gnu: r-nodbi: Update to 0.14.0.
discard 13e8f07979 gnu: r-insight: Update to 1.4.4.
discard 843b968231 gnu: r-officer: Update to 0.7.2.
discard 286d28800b gnu: r-pupillometryr: Update to 0.0.7.
discard 456ad227d9 gnu: r-itsadug: Update to 2.5.
discard 0fc94b4712 gnu: r-ggsci: Update to 4.2.0.
discard 4319f81d10 gnu: r-ggseqlogo: Update to 0.2.2.
discard e615c2594f gnu: r-fsa: Update to 0.10.1.
discard 8405c4e3e3 gnu: r-arules: Update to 1.7.13.
discard 52e3ee4bcc gnu: r-simdesign: Update to 2.22.
discard f849392f9f gnu: r-fbasics: Update to 4052.98.
discard 89ec4c4733 gnu: r-tseries: Update to 0.10-59.
discard add66b50ca gnu: r-statnet-common: Update to 4.13.0.
discard b367910a44 gnu: r-nanoparquet: Update to 0.4.3.
discard 868ff8a9f0 gnu: r-venndiagram: Update to 1.8.2.
discard 4b60fe8ac5 gnu: r-trycatchlog: Update to 1.3.3.
discard 9df9cd1c00 gnu: r-mice: Update to 3.19.0.
discard f54c7288c6 gnu: r-ordinal: Update to 2025.12-29.
discard 5e28dc4e18 gnu: r-statsexpressions: Update to 1.7.2.
discard 524241efc7 gnu: r-broom: Update to 1.0.11.
discard 4a323338f3 gnu: r-knitrbootstrap: Update to 1.0.4.
discard 81dbdd3a34 gnu: r-knitr: Update to 1.51.
discard 7fa9d11940 gnu: r-rmumps: Update to 5.2.1-36.
discard ca7af876d8 gnu: r-lamw: Update to 2.2.6.
discard a1a46bf36d gnu: r-proxy: Update to 0.4-29.
discard ec7bf1d4c4 gnu: r-circlize: Update to 0.4.17.
discard 7b73bb7d4c gnu: r-audio: Update to 0.1-12.
discard c70174e943 gnu: r-rcppspdlog: Update to 0.0.24.
discard a0d2cf0675 gnu: r-rcppcctz: Update to 0.2.14.
discard 73439af6f0 gnu: r-ggtangle: Update to 0.1.0.
discard 8cae644641 gnu: r-mbess: Update to 4.9.42.
discard 8c5ed84dc0 gnu: r-fastglm: Update to 0.0.4.
discard f8b6ee0fcd gnu: r-hmisc: Update to 5.2-5.
discard 9e831a0146 gnu: r-selectr: Update to 0.5-1.
discard 67098d34a9 gnu: r-secretbase: Update to 1.1.0.
discard bbe0f9489b gnu: r-astsa: Update to 2.4.
discard 35843e9c57 gnu: r-mclogit: Update to 0.9.15.
discard 9c4521e536 gnu: r-ga: Update to 3.2.5.
discard 2f2ea4b6fd gnu: r-plumber: Update to 1.3.2.
discard a2d46b454e gnu: r-plotmo: Update to 3.7.0.
discard 6ad5ed5a7d gnu: r-plotfunctions: Update to 1.5.
discard a4b602bcfc gnu: r-oompabase: Update to 3.2.11.
discard 7bd5e83c3a gnu: r-ggvenndiagram: Update to 1.5.7.
discard dfb1c58cb0 gnu: r-zoo: Update to 1.8-15.
discard 748145aa17 gnu: r-climatol: Update to 4.4-0.
discard 346c0bb728 gnu: r-climaemet: Update to 1.5.0.
discard 8e7379a752 gnu: r-robslopes: Update to 1.1.4.
discard e787ba3552 gnu: r-ggstatsplot: Update to 0.13.4.
discard 31d7a2f240 gnu: r-ggstats: Update to 0.12.0.
discard 78ebd4d05e gnu: r-ggfittext: Update to 0.10.3.
discard 4977a8fd42 gnu: r-earth: Update to 5.3.5.
discard 96fac5322f gnu: r-data-table: Update to 1.18.0.
discard 0f47cef4f7 gnu: r-collapse: Update to 2.1.6.
discard 750f32d637 gnu: r-cardx: Update to 0.3.1.
discard a7c78ed8d6 gnu: r-abn: Update to 3.1.13.
discard 1f33882d26 gnu: r-metap: Update to 1.13.
discard 67305ff2eb gnu: r-mutoss: Update to 0.1-14.
discard baf367d6c2 gnu: r-valr: Update to 0.9.1.
discard 5b834a697e gnu: r-cpp11bigwig: Update to 0.1.3.
discard 5fd651fb20 gnu: r-bh: Update to 1.90.0-1.
discard e48a214780 gnu: r-testthat: Update to 3.3.2.
discard 1370c115af gnu: r-duckdb: Update to 1.4.3.
discard 3c55d0e5ca gnu: r-shinystan: Update to 2.7.0.
discard 3ddba29916 gnu: r-rmapshaper: Add update note.
discard 1695dcc9c5 gnu: r-glmmtmb: Disable one test.
discard 29101f6bbe gnu: r-vcr: Update to 2.1.0.
discard a6af4bcfdb gnu: r-maxlik: Update to 1.5-2.2.
discard 3e2caf490a gnu: r-microbiomestat: Update to 1.3.
discard eecff33e81 gnu: r-paletteer: Update to 1.7.0.
discard 100abc6dfe gnu: r-futile-logger: Update to 1.4.9.
discard 2aec763c9c gnu: r-yulab-utils: Update to 0.2.3.
discard 1557cba8f9 gnu: r-aster: Update to 1.3-7.
discard 4c2265e044 gnu: r-yaml: Update to 2.3.12.
discard 6fdfb07242 gnu: r-wk: Update to 0.9.5.
discard a95b42418f gnu: r-later: Update to 1.4.5.
discard f1b91f6180 gnu: r-redland: Update to 1.0.17-19.
discard 1c1ff786b4 gnu: r-loo: Update to 2.9.0.
discard bb4a9c88ee gnu: r-litedown: Update to 0.9.
discard 9b9f6925a8 gnu: r-ctrdata: Update to 1.25.1.
discard 8a02ea9f55 gnu: r-rcpp: Update to 1.1.1.
discard a64f8d887b gnu: r-feather: Update to 0.4.0.
discard b986bdc5cd gnu: r-geos: Update to 0.2.5.
discard 346ac2a615 gnu: r-htmltools: Update to 0.5.9.
discard e0a174c4d4 gnu: r-httr2: Update to 1.2.2.
discard ccf7122a6a gnu: r-purrr: Update to 1.2.1.
discard 4a69bab720 gnu: r-e1071: Update to 1.7-17.
discard 4e883e5a0a gnu: r-dbscan: Update to 1.2.4.
discard b6b9fe963c gnu: r-extradistr: Update to 1.10.0.1.
discard 311d956c22 gnu: r-catdata: Update to 1.2.5.
discard 86dbeef35c gnu: r-roi: Update to 1.0-2.
discard 0e1d1a3320 gnu: r-latex2exp: Update to 0.9.8.
discard 22802dc924 gnu: r-xfun: Update to 0.55.
discard 424a750df0 gnu: r-timeseries: Update to 4052.112.
discard b4d5a76094 gnu: r-vim: Update to 7.0.0.
discard 3d7e71890f gnu: r-isoband: Update to 0.3.0.
discard d5ac24e6f5 gnu: r-reformulas: Update to 0.4.3.1.
discard 97d6170309 gnu: r-parallelly: Update to 1.46.1.
discard 591265b58f gnu: r-rlrsim: Update to 3.1-9.
discard 4c31ec2f6c gnu: r-rsqlite: Update to 2.4.5.
discard dc7ec35bc1 gnu: r-exactextractr: Update to 0.10.1.
discard 391dc9c439 gnu: r-vroom: Update to 1.6.7.
discard efd2d188b1 gnu: r-parsnip: Update to 1.4.0.
discard 598eb63dba gnu: r-tidypredict: Update to 1.0.0.
discard 8760c92100 gnu: r-spatstat: Update to 3.5-0.
discard a9255fa117 gnu: r-spatstat-linnet: Update to 3.4-0.
discard aa25119965 gnu: r-patrick: Update to 0.3.1.
discard 48170114a4 gnu: r-xgboost: Update to 3.1.2.1.
discard 8024d77bde gnu: r-xml2: Update to 1.5.1.
discard e3950287c3 gnu: r-text2vec: Update to 0.6.6.
discard 28604b2259 gnu: r-yulab-utils: Update to 0.2.2.
discard bb0fb6c2ac gnu: r-performance: Update to 0.15.3.
discard d3dadee241 gnu: r-doby: Update to 4.7.1.
discard b53936ad91 gnu: r-piton: Update to 1.0.1.
discard 560d9a0307 gnu: r-getoptlong: Update to 1.1.0.
discard 7fc346f936 gnu: r-globaloptions: Update to 0.1.3.
discard 00fb05c92d gnu: r-bindr: Update to 0.1.3.
discard 80f134c18c gnu: r-ggtangle: Update to 0.0.9.
discard 4b3ec07946 gnu: r-mirai: Update to 2.5.3.
discard af61ed05b4 gnu: r-ggpmisc: Update to 0.6.3.
discard 4907f353c1 gnu: r-lme4: Update to 1.1-38.
discard 304270a817 gnu: r-bestnormalize: Update to 1.9.2.
discard edccccbb5f gnu: r-runner: Update to 0.4.5.
discard ee2c2a5421 gnu: r-rpresto: Update to 1.4.8.
discard 34858420e0 gnu: r-gplots: Update to 3.3.0.
discard d41b6165c8 gnu: r-ggthemes: Update to 5.2.0.
discard d60c8dad63 gnu: r-ggbeeswarm: Update to 0.7.3.
discard 837c273678 gnu: r-cards: Update to 0.7.1.
discard 803a99046b gnu: r-box: Update to 1.2.1.
discard 535b39fd5d gnu: r-yaml: Update to 2.3.11.
discard 23fa24caa3 gnu: r-testthat: Update to 3.3.1.
discard cdc6ef1b03 gnu: Add r-nlstools.
discard a11cdbce89 gnu: Add r-qvcalc.
add af60daaa10 gnu: openpmix: Fix home-page.
add e606fa7959 gnu: opencolorio: Update input.
add 4c12b9b002 gnu: Add apache-parent-pom-33.
add dece6d674e gnu: Add apache-commons-parent-pom-78.
add 7c8f77c51c gnu: Add java-commons-io 2.21.
add a216d12073 gnu: Add java-mime4j-core.
add 6dfaa6027d gnu: Add java-jakarta-activation-api.
add 6bfab7b3fb gnu: Add java-axiom-base64-utils.
add ca55e8152a gnu: Add java-axiom-xml-utils.
add 7737d389c6 gnu: Add java-axiom-core-streams.
add 710d15809f gnu: Add java-axiom-weaver-annotations.
add cd3faab72f gnu: Add java-axiom-api.
add f60fd29033 gnu: Add java-axiom-core-mixins.
add eaed2a68a6 gnu: Add java-axiom-om-mixins.
add 7d7dd885f4 gnu: Add java-axiom-dom-mixins.
add aafce91741 gnu: Add java-axiom-impl.
add 9436a2f8c0 gnu: Add java-saxon-he-10.
add d08bceec95 doc: Fix an URL.
add 6f43befa56 doc: Small rewording.
add 082a636053 doc: Add an URL link.
add 66cc4bf47f gnu: pocl: Apply style and modernize.
add c84b42a204 gnu: pocl: Update to 6.0.
add eac0bf195a gnu: ocl-icd: Update to 2.3.4.
add 3e5d7e07a5 gnu: clinfo: Update to 3.0.25.02.14.
add e29c543bce gnu: Remove python-cleanlab-1.
add c48b5242af gnu: Remove aegis.
add 5966347239 gnu: Remove cook.
add e39f358920 gnu: Remove bison-3.0.
add 369f6a72a3 gnu: Remove python-monotonic.
add 54f353a1af gnu: Remove curseradio.
add 9a7ca0acdf gnu: krita: Update to 5.2.14.
add 1e0e883536 gnu: python-ctranslate2: Update input.
add d4837027f5 gnu: Remove pybind11-2.10.
new c677e92ae0 gnu: Add r-qvcalc.
new 581c961fd3 gnu: Add r-nlstools.
new d5b8bbe7e7 gnu: r-testthat: Update to 3.3.1.
new ef5b8f9731 gnu: r-yaml: Update to 2.3.11.
new c8804b76cc gnu: r-box: Update to 1.2.1.
new ffd0962bbb gnu: r-cards: Update to 0.7.1.
new ffdb1b1b97 gnu: r-ggbeeswarm: Update to 0.7.3.
new 22aa993378 gnu: r-ggthemes: Update to 5.2.0.
new f192d541a4 gnu: r-gplots: Update to 3.3.0.
new 9fadc80dbe gnu: r-rpresto: Update to 1.4.8.
new c19d08e6c7 gnu: r-runner: Update to 0.4.5.
new 068923131f gnu: r-bestnormalize: Update to 1.9.2.
new da2ca38a42 gnu: r-lme4: Update to 1.1-38.
new 4d74e43d00 gnu: r-ggpmisc: Update to 0.6.3.
new ff027f4fc2 gnu: r-mirai: Update to 2.5.3.
new 121cdf3a13 gnu: r-ggtangle: Update to 0.0.9.
new 12a9517c43 gnu: r-bindr: Update to 0.1.3.
new 74a117deef gnu: r-globaloptions: Update to 0.1.3.
new 346ba5394a gnu: r-getoptlong: Update to 1.1.0.
new 17689a20da gnu: r-piton: Update to 1.0.1.
new 48dac309b2 gnu: r-doby: Update to 4.7.1.
new 73dd564c20 gnu: r-performance: Update to 0.15.3.
new 1d5a1f62ef gnu: r-yulab-utils: Update to 0.2.2.
new 7277b656a3 gnu: r-text2vec: Update to 0.6.6.
new 75f35f8517 gnu: r-xml2: Update to 1.5.1.
new 5f8ce175a5 gnu: r-xgboost: Update to 3.1.2.1.
new 030fc994c1 gnu: r-patrick: Update to 0.3.1.
new deeb9f313f gnu: r-spatstat-linnet: Update to 3.4-0.
new f2c58c47d2 gnu: r-spatstat: Update to 3.5-0.
new 201fb40f7b gnu: r-tidypredict: Update to 1.0.0.
new 192191edfd gnu: r-parsnip: Update to 1.4.0.
new 2585a402f1 gnu: r-vroom: Update to 1.6.7.
new 4690850b29 gnu: r-exactextractr: Update to 0.10.1.
new 484de9c574 gnu: r-rsqlite: Update to 2.4.5.
new 128305cf3f gnu: r-rlrsim: Update to 3.1-9.
new 4f0224b295 gnu: r-parallelly: Update to 1.46.1.
new 8c42d465c4 gnu: r-reformulas: Update to 0.4.3.1.
new fc258ca5cb gnu: r-isoband: Update to 0.3.0.
new 81cbdfa996 gnu: r-vim: Update to 7.0.0.
new f1268d6532 gnu: r-timeseries: Update to 4052.112.
new ae0cff7293 gnu: r-xfun: Update to 0.55.
new dfe6155731 gnu: r-latex2exp: Update to 0.9.8.
new f87a2c4e41 gnu: r-roi: Update to 1.0-2.
new 8ae071ad54 gnu: r-catdata: Update to 1.2.5.
new 5664bc4295 gnu: r-extradistr: Update to 1.10.0.1.
new c5a0332153 gnu: r-dbscan: Update to 1.2.4.
new a242f071bc gnu: r-e1071: Update to 1.7-17.
new b28ea3ec1c gnu: r-purrr: Update to 1.2.1.
new ee9eb62eb6 gnu: r-httr2: Update to 1.2.2.
new 9fd4a1fc97 gnu: r-htmltools: Update to 0.5.9.
new c8c023bb68 gnu: r-geos: Update to 0.2.5.
new aa06f6367e gnu: r-feather: Update to 0.4.0.
new c9094f6013 gnu: r-rcpp: Update to 1.1.1.
new 5b0d60096b gnu: r-ctrdata: Update to 1.25.1.
new d829ee860a gnu: r-litedown: Update to 0.9.
new bcfa69a83b gnu: r-loo: Update to 2.9.0.
new 6a9295577c gnu: r-redland: Update to 1.0.17-19.
new 664ccd7745 gnu: r-later: Update to 1.4.5.
new bdbcd9def1 gnu: r-wk: Update to 0.9.5.
new a17b29ec80 gnu: r-yaml: Update to 2.3.12.
new a687ba99a9 gnu: r-aster: Update to 1.3-7.
new b285d82b34 gnu: r-yulab-utils: Update to 0.2.3.
new af0c5034e2 gnu: r-futile-logger: Update to 1.4.9.
new 83b22da9a0 gnu: r-paletteer: Update to 1.7.0.
new 63806b3341 gnu: r-microbiomestat: Update to 1.3.
new 52f6341ec0 gnu: r-maxlik: Update to 1.5-2.2.
new f3927db5c9 gnu: r-vcr: Update to 2.1.0.
new c57c77fdcc gnu: r-glmmtmb: Disable one test.
new 4408075422 gnu: r-rmapshaper: Add update note.
new 79452954b4 gnu: r-shinystan: Update to 2.7.0.
new 8d2213bcd0 gnu: r-duckdb: Update to 1.4.3.
new 0e3da53e23 gnu: r-testthat: Update to 3.3.2.
new eaaa511357 gnu: r-bh: Update to 1.90.0-1.
new 836eb0d27a gnu: r-cpp11bigwig: Update to 0.1.3.
new e11038dfc9 gnu: r-valr: Update to 0.9.1.
new 7dfce85ab0 gnu: r-mutoss: Update to 0.1-14.
new 1e5cdca83e gnu: r-metap: Update to 1.13.
new f68dec6366 gnu: r-abn: Update to 3.1.13.
new 33b141adea gnu: r-cardx: Update to 0.3.1.
new 4aa537fe4a gnu: r-collapse: Update to 2.1.6.
new 74d10e9926 gnu: r-data-table: Update to 1.18.0.
new 6a79234c9e gnu: r-earth: Update to 5.3.5.
new 3d3723e261 gnu: r-ggfittext: Update to 0.10.3.
new 77adc99234 gnu: r-ggstats: Update to 0.12.0.
new c1808d4516 gnu: r-ggstatsplot: Update to 0.13.4.
new 924e34b828 gnu: r-robslopes: Update to 1.1.4.
new c978fa799d gnu: r-climaemet: Update to 1.5.0.
new 44b6d32425 gnu: r-climatol: Update to 4.4-0.
new 9384b5f38a gnu: r-zoo: Update to 1.8-15.
new 7105620980 gnu: r-ggvenndiagram: Update to 1.5.7.
new 60ab6985a2 gnu: r-oompabase: Update to 3.2.11.
new 8ddcccca4c gnu: r-plotfunctions: Update to 1.5.
new 1545fa5d2b gnu: r-plotmo: Update to 3.7.0.
new ffad69c151 gnu: r-plumber: Update to 1.3.2.
new e19b1b4bda gnu: r-ga: Update to 3.2.5.
new f229f95ee1 gnu: r-mclogit: Update to 0.9.15.
new 01c7add5f7 gnu: r-astsa: Update to 2.4.
new 01555edd34 gnu: r-secretbase: Update to 1.1.0.
new e2ad423d1f gnu: r-selectr: Update to 0.5-1.
new 2158b0dc46 gnu: r-hmisc: Update to 5.2-5.
new f6d9a29c5f gnu: r-fastglm: Update to 0.0.4.
new f9e2b8bd21 gnu: r-mbess: Update to 4.9.42.
new 92d06a021d gnu: r-ggtangle: Update to 0.1.0.
new ebd25cd862 gnu: r-rcppcctz: Update to 0.2.14.
new 7baec32ca0 gnu: r-rcppspdlog: Update to 0.0.24.
new bfbec93f4e gnu: r-audio: Update to 0.1-12.
new 9312b59106 gnu: r-circlize: Update to 0.4.17.
new a1ee4fa45a gnu: r-proxy: Update to 0.4-29.
new f53bf82d59 gnu: r-lamw: Update to 2.2.6.
new 8797962488 gnu: r-rmumps: Update to 5.2.1-36.
new 449e6e5ba1 gnu: r-knitr: Update to 1.51.
new bac9ec12d1 gnu: r-knitrbootstrap: Update to 1.0.4.
new 3b64b253aa gnu: r-broom: Update to 1.0.11.
new 64b2f471b2 gnu: r-statsexpressions: Update to 1.7.2.
new 0e41695749 gnu: r-ordinal: Update to 2025.12-29.
new 52695be836 gnu: r-mice: Update to 3.19.0.
new 31537b60bb gnu: r-trycatchlog: Update to 1.3.3.
new 74a6a24076 gnu: r-venndiagram: Update to 1.8.2.
new 7b0b2d1c99 gnu: r-nanoparquet: Update to 0.4.3.
new a97092b5e1 gnu: r-statnet-common: Update to 4.13.0.
new c635f4354d gnu: r-tseries: Update to 0.10-59.
new 97922cd80d gnu: r-fbasics: Update to 4052.98.
new f5e9a94ea5 gnu: r-simdesign: Update to 2.22.
new 29d463a285 gnu: r-arules: Update to 1.7.13.
new 49450e55fe gnu: r-fsa: Update to 0.10.1.
new bc5e146b96 gnu: r-ggseqlogo: Update to 0.2.2.
new 91639afb9e gnu: r-ggsci: Update to 4.2.0.
new 81960643d2 gnu: r-itsadug: Update to 2.5.
new d93e697e00 gnu: r-pupillometryr: Update to 0.0.7.
new 5810884a8a gnu: r-officer: Update to 0.7.2.
new efc6fb109b gnu: r-insight: Update to 1.4.4.
new 04d96e1caf gnu: r-nodbi: Update to 0.14.0.
new 1c9400c40b gnu: r-abcrf: Update to 2.0.
new 39f8dae6df gnu: r-gam: Update to 1.22-7.
new aaefeef60c gnu: r-superlearner: Update to 2.0-40.
new 4d083e297b gnu: r-dofuture: Update to 1.1.3.
new 3124074eca gnu: r-svdialogs: Update to 1.1.2.
new b080400a06 gnu: r-emmeans: Update to 2.0.1.
new 25630481b8 gnu: r-bayesplot: Update to 1.15.0.
new bd7d08949e gnu: r-tmb: Update to 1.9.19.
new e86ba13a43 gnu: r-ggeffects: Update to 2.3.2.
new d9ddebd98c gnu: r-gert: Update to 2.3.1.
new 1305679d36 gnu: r-mvabund: Update to 4.2.8.
new cf5bf6c018 gnu: r-afex: Update to 1.5-1.
new 272a2ca590 gnu: r-fmesher: Update to 0.6.1.
new a29669fdd6 gnu: r-tm: Update to 0.7-17.
new 95791ed4da gnu: r-tidytree: Update to 0.4.7.
new bc894d3888 gnu: r-sparsevctrs: Update to 0.3.5.
new 378a864700 gnu: r-rncl: Update to 0.8.8.
new 35bd7038d7 gnu: r-gmisc: Update to 3.1.0.
new ddb669ce4b gnu: r-spam: Update to 2.11-3.
new c6b874cdd6 gnu: r-future-apply: Update to 1.20.1.
new 9ede4b1743 gnu: r-shinybs: Update to 0.63.0.
new e1d06732fd gnu: r-testit: Update to 0.15.
new 608c7120e3 gnu: r-msir: Update to 1.4.
new da55f19ce8 gnu: r-lavaan: Update to 0.6-21.
new 714d111b86 gnu: r-pegas: Update to 1.4.
new 82247b092a gnu: r-bqtl: Update to 1.0-39.
new c924430b71 gnu: r-bookdown: Update to 0.46.
new 951b63f233 gnu: r-gggenes: Update to 0.6.0.
new fe321b2ddd gnu: r-arrow: Update to 22.0.0.1.
new 1ee2fa9d87 gnu: r-sctransform: Update to 0.4.3.
new bc6b671fba gnu: r-blme: Update to 1.0-7.
new c71a44bc25 gnu: r-leidenbase: Update to 0.1.36.
new 547b9c569c gnu: r-terra: Update to 1.8-93.
new 51410d6b22 gnu: r-lifecycle: Update to 1.0.5.
new 97b1b566c2 gnu: r-r-devices: Update to 2.17.3.
new 91886298be gnu: r-hdrcde: Update to 3.5.0.
new b2cbdb5796 gnu: r-imager: Update to 1.0.8.
new af278117da gnu: r-anthropometry: Update to 1.21.
new beed157ad4 gnu: r-knn-covertree: Update to 1.1.
new 261d627753 gnu: r-forecast: Update to 9.0.0.
new 008a2728a0 gnu: r-polycor: Update to 0.8-2.
new 1fa1222e76 gnu: r-butcher: Update to 0.4.0.
new 517ffdba71 gnu: r-rsconnect: Update to 1.7.0.
new 0ec78997b5 gnu: r-rstantools: Update to 2.6.0.
new d46a325797 gnu: r-kendall: Update to 2.2.2.
new cb9fa8effd gnu: r-projpred: Update to 2.10.0.
new 32333abd4f gnu: r-shapforxgboost: Update to 0.2.0.
new 6bea521a9f gnu: r-spatstat-utils: Update to 3.2-1.
new e56436ee32 gnu: r-clusterr: Update to 1.3.6.
new 30f2910c31 gnu: r-nanoarrow: Update to 0.7.0-2.
new b964eaec37 gnu: r-tidypredict: Update to 1.0.1.
new 3e0948e203 gnu: r-parsnip: Update to 1.4.1.
new f2b9d1f04a gnu: r-infer: Update to 1.1.0.
new 6a279812a1 gnu: r-lsa: Update to 0.73.4.
new 23cd77c1bc gnu: r-qtl: Update to 1.74.
new ff42c1efb3 gnu: r-seuratobject: Update to 5.3.0.
new fb516dfc3d gnu: r-seurat: Update to 5.4.0.
new c007540376 gnu: r-mlr3: Update to 1.3.0.
new d4bb4bf871 gnu: r-mlr3learners: Update to 0.14.0.
new 510b892b53 gnu: r-mlr3tuning: Update to 1.5.1.
new 1187f0467e gnu: r-highlight: Update to 0.5.2.
new 895ea7cd3b gnu: r-stars: Update to 0.7-0.
new e661d6c6cc gnu: r-delaporte: Update to 8.4.3.
new e9de31598a gnu: r-vgam: Update to 1.1-14.
new 902e291ebf gnu: r-tesseract: Update to 5.2.4.
new 651e8a4ef8 gnu: r-rlang: Update to 1.1.7.
new 2c0a151401 gnu: r-tibble: Update to 3.3.1.
new 944b3d5893 gnu: r-rcpparmadillo: Update to 15.2.3-1.
new e588e58bc4 gnu: r-tidyr: Update to 1.3.2.
new 97e584a74e gnu: Add r-tidydr.
new ff4f26db6b gnu: r-screpertoire: Update to 2.6.2.
new f6178334ec gnu: r-txdbmaker: Update to 1.6.2.
new d5a791199b gnu: r-reactome-db: Update to 1.95.0.
new 56408acd84 gnu: r-systempiperdata: Update to 2.14.2.
new 6f8b3d8c4d gnu: r-anvil: Update to 1.22.3.
new b0ecef08f0 gnu: r-atena: Update to 1.16.1.
new 81300a4eec gnu: r-escape: Update to 2.6.2.
new 060aab58f9 gnu: r-immapex: Update to 1.4.3.
new 726f8d1fe3 gnu: r-edger: Update to 4.8.2.
new 01287bf89d gnu: r-enhancedvolcano: Update to 1.28.2.
new 4e5afb6031 gnu: r-genomeinfodb: Update to 1.46.2.
new 4c4d8cd050 gnu: r-genomicranges: Update to 1.62.1.
new cf4ab9d8d0 gnu: r-gsva: Update to 2.4.4.
new ab1cca68d9 gnu: r-rcy3: Update to 2.30.1.
new 5b26c780c3 gnu: r-rhdf5: Update to 2.54.1.
new 75bdc99130 gnu: r-rtracklayer: Update to 1.70.1.
new 93ed932c37 gnu: r-sesame: Update to 1.28.1.
new db3dfb850d gnu: r-tcgautils: Update to 1.30.2.
new eac9adb357 gnu: r-transcriptr: Update to 1.38.3.
new e95e51ab04 gnu: r-spectra: Update to 1.20.1.
new 5d74022aa1 gnu: r-systempiper: Update to 2.16.3.
new 13ddc6ef8a gnu: r-tximport: Update to 1.38.2.
new b6c416cc2d gnu: r-zellkonverter: Update to 1.20.1.
new 1a07a583cb gnu: r-graph: Update to 1.88.1.
new c38ce85d4d gnu: r-ggtree: Update to 4.0.4.
new 046f18b3c5 gnu: r-fgsea: Update to 1.36.2.
new 9a7192ecbe gnu: r-enrichplot: Update to 1.30.4.
new 484bafa589 gnu: r-clusterprofiler: Update to 4.18.4.
new 620bd2c3fa gnu: r-yapsa: Update to 1.36.1.
new 64fc6b61ce gnu: r-wppi: Update to 1.18.0.
new 1b1f2421d6 gnu: r-flowcore: Update to 2.22.1.
new ef411b68b7 gnu: r-ggcyto: Update to 1.38.1.
new d23afbed72 gnu: r-flowworkspace: Update to 4.22.1.
new 259937878f gnu: r-variancepartition: Update to 1.40.1.
new 3ce878c0e1 gnu: r-ucsc-utils: Update to 1.6.1.
new c2d2367700 gnu: r-bioccheck: Update to 1.46.3.
new 090dd4f242 gnu: r-s4arrays: Update to 1.10.1.
new 10f9336540 gnu: r-h5mread: Update to 1.2.1.
new 7912f1f2d7 gnu: r-sparsearray: Update to 1.10.8.
new e5c411a8ed gnu: r-mscoreutils: Update to 1.22.1.
new dd8e61ba7f gnu: r-bayesspace: Update to 1.20.2.
new ac703d3e66 gnu: r-tximeta: Update to 1.28.1.
new 6c3db3dbc2 gnu: r-msnid: Disable one test.
new aa158b2409 gnu: r-signac: Update to 1.16.0-1.f5a8411.
new b883af36f1 gnu: Add r-rarr.
new aedf809c10 gnu: r-zarrdataframe: Update to 0.0.0-2.84c7db2.
new 28c2e790ed gnu: r-qs: Skip another test.
new fc27a1f908 gnu: r-pizzarr: Update to 0.1.0-2.5f47057.
new 037b23a0e3 gnu: r-zarrarray: Update to 1.0-2.3cc3e6a.
new 5932e5c6ee gnu: r-rnifti: Update to 1.9.0.
new 6810095c21 gnu: r-rcppannoy: Update to 0.0.23.
new ba7b3686f6 gnu: r-manipulatewidget: Update to 0.11.2.
new d1accd968d gnu: r-vctrs: Update to 0.7.0.
new 330e71c786 gnu: r-stringdist: Update to 0.9.17.
new 3c59157ea2 gnu: r-extradistr: Update to 1.10.0.2.
new dcdde10b35 gnu: r-stringfish: Update to 0.18.0.
new 9aad1e23e2 gnu: r-netgsa: Update to 4.0.7.
new ce3d4d6499 gnu: r-blob: Update to 1.3.0.
new cd15f74ff7 gnu: r-fpc: Update to 2.2-14.
new cf5721e7c0 gnu: r-prabclus: Update to 2.3-5.
new d43ec59ce9 gnu: r-benchmarkmedata: Update to 2.0.0.
new f227e3c1ba gnu: r-clock: Update to 0.7.4.
new f3ade42ff0 gnu: r-ggpp: Update to 0.6.0.
new 0fede7c733 gnu: r-snowflakeauth: Update to 0.2.1.
new c7c3c3beb1 gnu: r-survival: Update to 3.8-6.
new a122b04cc9 gnu: r-polylabelr: Update to 1.0.0.
new 4417d7166e gnu: r-grandr: Update to 0.2.7.
new 12b8ce9491 gnu: r-tglkmeans: Update to 0.5.8.
new 5323077d11 gnu: r-secretbase: Update to 1.1.1.
new b593248607 gnu: r-ggtangle: Update to 0.1.1.
new f1c43912aa gnu: r-rcppspdlog: Update to 0.0.26.
new be50be03e7 gnu: r-rcppthread: Update to 2.3.0.
new 9012d168eb gnu: r-ctrdata: Update to 1.26.0.
new 444c7a1d33 gnu: r-fastmatch: Update to 1.1-8.
new 031f88c572 gnu: r-xfun: Update to 0.56.
new e1a8bf70d8 gnu: r-rappdirs: Update to 0.3.4.
new d209986f56 gnu: r-renv: Update to 1.1.6.
new ab730c64e4 gnu: r-factominer: Update to 2.13.
new 1d08852111 gnu: r-officer: Update to 0.7.3.
new 28570dd4f3 gnu: r-dofuture: Update to 1.2.0.
new 44ccef9068 gnu: r-ggformula: Update to 1.0.1.
new b6c6318ad0 gnu: r-glmmtmb: Update to 1.1.14.
new cc79c71cf1 gnu: r-lmertest: Update to 3.2-0.
new ce3144c7f2 gnu: r-isorix: Update to 0.9.4.
new f55e60b0f7 gnu: r-future: Update to 1.69.0.
new b5a2e9e5ba gnu: r-shinyjs: Update to 2.1.1.
new 89c99b2e92 gnu: r-sf: Update to 1.0-24.
new b64524f263 gnu: r-xml2: Update to 1.5.2.
new 6537f170dc gnu: r-xgboost: Update to 3.1.3.1.
new d626715b94 gnu: r-alabama: Update to 2025.1.0.
new b848f74691 gnu: r-actfrag: Update to 0.1.2.
new e4595f1a2f gnu: r-expint: Update to 0.2-0.
new f1b806be7d gnu: r-rcdd: Update to 1.6-1.
new 518d5f683e gnu: r-distributional: Update to 0.6.0.
new 58f6576826 gnu: r-spatstat-univar: Update to 3.1-6.
new 2ed4a54d91 gnu: r-warp: Update to 0.2.3.
new 7911410082 gnu: r-lwgeom: Update to 0.2-15.
new f0b2a4eba0 gnu: r-paws-common: Update to 0.8.8.
new 00cd809657 gnu: r-rstudioapi: Update to 0.18.0.
new 29007a6ac0 gnu: r-segmented: Update to 2.2-0.
new 9a062d5c15 gnu: r-ranger: Update to 0.18.0.
new ff2129e866 gnu: r-flames: Update to 2.4.2.
new 14495c5803 gnu: r-pcatools: Update to 2.22.1.
This update added new revisions after undoing existing revisions.
That is to say, some revisions that were in the old version of the
branch are not in the new version. This situation occurs
when a user --force pushes a change and generates a repository
containing something like this:
* -- * -- B -- O -- O -- O (1faa6dab6c)
\
N -- N -- N refs/heads/r-team (14495c5803)
You should already have received notification emails for all of the O
revisions, and so the following emails describe only the N revisions
from the common base, B.
Any revisions marked "omit" are not gone; other references still
refer to them. Any revisions marked "discard" are gone forever.
The 305 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
doc/guix.texi | 18 +-
gnu/local.mk | 6 -
gnu/packages/bioconductor.scm | 13 +-
gnu/packages/bison.scm | 13 --
gnu/packages/cook.scm | 91 --------
gnu/packages/cran.scm | 230 +++++++++----------
gnu/packages/image-processing.scm | 2 +-
gnu/packages/java-xml.scm | 268 +++++++++++++++++++++++
gnu/packages/java.scm | 82 +++++++
gnu/packages/kde-graphics.scm | 4 +-
gnu/packages/machine-learning.scm | 27 +--
gnu/packages/maven-parent-pom.scm | 10 +
gnu/packages/music.scm | 35 ---
gnu/packages/opencl.scm | 118 +++++-----
gnu/packages/parallel.scm | 2 +-
gnu/packages/patches/aegis-constness-error.patch | 12 -
gnu/packages/patches/aegis-perl-tempdir1.patch | 14 --
gnu/packages/patches/aegis-perl-tempdir2.patch | 18 --
gnu/packages/patches/aegis-test-fixup-1.patch | 15 --
gnu/packages/patches/aegis-test-fixup-2.patch | 24 --
gnu/packages/python-xyz.scm | 16 --
gnu/packages/statistics.scm | 16 +-
gnu/packages/time.scm | 20 --
gnu/packages/version-control.scm | 97 --------
po/packages/POTFILES.in | 1 -
25 files changed, 572 insertions(+), 580 deletions(-)
delete mode 100644 gnu/packages/cook.scm
delete mode 100644 gnu/packages/patches/aegis-constness-error.patch
delete mode 100644 gnu/packages/patches/aegis-perl-tempdir1.patch
delete mode 100644 gnu/packages/patches/aegis-perl-tempdir2.patch
delete mode 100644 gnu/packages/patches/aegis-test-fixup-1.patch
delete mode 100644 gnu/packages/patches/aegis-test-fixup-2.patch
