guix_mirror_bot pushed a change to branch next-master
in repository guix.
from c02385b462 gnu: fntsample, guix: Fix cosmetic typos.
new fc542b2fb3 gnu: Add r-qvcalc.
new ed73b9d1cd gnu: Add r-nlstools.
new 31263e7283 gnu: r-testthat: Update to 3.3.1.
new da7566800d gnu: r-yaml: Update to 2.3.11.
new fddf1f0783 gnu: r-box: Update to 1.2.1.
new d711a56ad6 gnu: r-cards: Update to 0.7.1.
new e1a5e892ba gnu: r-ggbeeswarm: Update to 0.7.3.
new b2e6f2a503 gnu: r-ggthemes: Update to 5.2.0.
new 012b35f016 gnu: r-gplots: Update to 3.3.0.
new 854d4fc32b gnu: r-rpresto: Update to 1.4.8.
new 5670131bc7 gnu: r-runner: Update to 0.4.5.
new 442e21efe7 gnu: r-bestnormalize: Update to 1.9.2.
new a07e45d991 gnu: r-lme4: Update to 1.1-38.
new 8b20907adf gnu: r-ggpmisc: Update to 0.6.3.
new bc759212fd gnu: r-mirai: Update to 2.5.3.
new 950a63656c gnu: r-ggtangle: Update to 0.0.9.
new 4736d3a221 gnu: r-bindr: Update to 0.1.3.
new 5994130a6f gnu: r-globaloptions: Update to 0.1.3.
new 177f5f2c1a gnu: r-getoptlong: Update to 1.1.0.
new 3b72b719c9 gnu: r-piton: Update to 1.0.1.
new fbe18f85c1 gnu: r-doby: Update to 4.7.1.
new 30cc554b69 gnu: r-performance: Update to 0.15.3.
new bca5e2339b gnu: r-yulab-utils: Update to 0.2.2.
new 358578ce5b gnu: r-text2vec: Update to 0.6.6.
new decea0ac35 gnu: r-xml2: Update to 1.5.1.
new 56e27aded0 gnu: r-xgboost: Update to 3.1.2.1.
new 54d59e8114 gnu: r-patrick: Update to 0.3.1.
new 9db8b9041f gnu: r-spatstat-linnet: Update to 3.4-0.
new e4cf63153e gnu: r-spatstat: Update to 3.5-0.
new 1eb1f8da82 gnu: r-tidypredict: Update to 1.0.0.
new 092394a94e gnu: r-parsnip: Update to 1.4.0.
new 58c574185d gnu: r-vroom: Update to 1.6.7.
new f5fc5b271a gnu: r-exactextractr: Update to 0.10.1.
new ee4bd4fbd6 gnu: r-rsqlite: Update to 2.4.5.
new 241f26efd1 gnu: r-rlrsim: Update to 3.1-9.
new dac559eab3 gnu: r-parallelly: Update to 1.46.1.
new 8d68114788 gnu: r-reformulas: Update to 0.4.3.1.
new fad8a7860f gnu: r-isoband: Update to 0.3.0.
new f654d1c3a1 gnu: r-vim: Update to 7.0.0.
new d1dec8f94d gnu: r-timeseries: Update to 4052.112.
new 1be86a0277 gnu: r-xfun: Update to 0.55.
new 1763dde3a0 gnu: r-latex2exp: Update to 0.9.8.
new d9728f5c2d gnu: r-roi: Update to 1.0-2.
new 43c3b1ec93 gnu: r-catdata: Update to 1.2.5.
new d65f4ac260 gnu: r-extradistr: Update to 1.10.0.1.
new fcd5267f0b gnu: r-dbscan: Update to 1.2.4.
new be97ae5276 gnu: r-e1071: Update to 1.7-17.
new 14b23d1e5b gnu: r-purrr: Update to 1.2.1.
new eca3503863 gnu: r-httr2: Update to 1.2.2.
new e397d80636 gnu: r-htmltools: Update to 0.5.9.
new 2674fa1be8 gnu: r-geos: Update to 0.2.5.
new 366298a3ad gnu: r-feather: Update to 0.4.0.
new 95016077ff gnu: r-rcpp: Update to 1.1.1.
new 5f8b46cca5 gnu: r-ctrdata: Update to 1.25.1.
new 5a829a2d28 gnu: r-litedown: Update to 0.9.
new 61276fbd96 gnu: r-loo: Update to 2.9.0.
new 8be940d8ee gnu: r-redland: Update to 1.0.17-19.
new 1eca31fa73 gnu: r-later: Update to 1.4.5.
new 64d282906e gnu: r-wk: Update to 0.9.5.
new 197ecf5974 gnu: r-yaml: Update to 2.3.12.
new 3f1edf7b2e gnu: r-aster: Update to 1.3-7.
new ac20251f5b gnu: r-yulab-utils: Update to 0.2.3.
new db67882075 gnu: r-futile-logger: Update to 1.4.9.
new 58057f5b12 gnu: r-paletteer: Update to 1.7.0.
new 530227b170 gnu: r-microbiomestat: Update to 1.3.
new e35746fcad gnu: r-maxlik: Update to 1.5-2.2.
new 355d0f087c gnu: r-vcr: Update to 2.1.0.
new 104823a8c3 gnu: r-glmmtmb: Disable one test.
new a52bd3dc52 gnu: r-rmapshaper: Add update note.
new 8adc00030d gnu: r-shinystan: Update to 2.7.0.
new f5d5053df7 gnu: r-duckdb: Update to 1.4.3.
new 125a6bff67 gnu: r-testthat: Update to 3.3.2.
new f5934f83d9 gnu: r-bh: Update to 1.90.0-1.
new 0bf9680093 gnu: r-cpp11bigwig: Update to 0.1.3.
new 1be75412e8 gnu: r-valr: Update to 0.9.1.
new 602cbc2939 gnu: r-mutoss: Update to 0.1-14.
new a54351b9be gnu: r-metap: Update to 1.13.
new aef879af48 gnu: r-abn: Update to 3.1.13.
new 798abfcc28 gnu: r-cardx: Update to 0.3.1.
new 88522017eb gnu: r-collapse: Update to 2.1.6.
new d1049ab66a gnu: r-data-table: Update to 1.18.0.
new 6737480dfc gnu: r-earth: Update to 5.3.5.
new 627c4582ad gnu: r-ggfittext: Update to 0.10.3.
new 70efdc1f8a gnu: r-ggstats: Update to 0.12.0.
new f94f0f9edc gnu: r-ggstatsplot: Update to 0.13.4.
new 76fdf06c4d gnu: r-robslopes: Update to 1.1.4.
new a710c0391b gnu: r-climaemet: Update to 1.5.0.
new 695ae6ec48 gnu: r-climatol: Update to 4.4-0.
new 1b566d6a32 gnu: r-zoo: Update to 1.8-15.
new d74d29594b gnu: r-ggvenndiagram: Update to 1.5.7.
new 7265477e1a gnu: r-oompabase: Update to 3.2.11.
new 19f30114ef gnu: r-plotfunctions: Update to 1.5.
new 0b6cfe1760 gnu: r-plotmo: Update to 3.7.0.
new f0948bf836 gnu: r-plumber: Update to 1.3.2.
new 00f9cddc6a gnu: r-ga: Update to 3.2.5.
new 41efbfeda6 gnu: r-mclogit: Update to 0.9.15.
new 74ef3e4c2c gnu: r-astsa: Update to 2.4.
new f4cb5832a7 gnu: r-secretbase: Update to 1.1.0.
new 2fdd557fd3 gnu: r-selectr: Update to 0.5-1.
new 2c0688d827 gnu: r-hmisc: Update to 5.2-5.
new 95107919b7 gnu: r-fastglm: Update to 0.0.4.
new 22e211e740 gnu: r-mbess: Update to 4.9.42.
new 2de22ac1d3 gnu: r-ggtangle: Update to 0.1.0.
new b04cb57a00 gnu: r-rcppcctz: Update to 0.2.14.
new 73778565f0 gnu: r-rcppspdlog: Update to 0.0.24.
new 25ec5de0be gnu: r-audio: Update to 0.1-12.
new 8d1b06bbd2 gnu: r-circlize: Update to 0.4.17.
new c457c5fce1 gnu: r-proxy: Update to 0.4-29.
new 461bc59d7a gnu: r-lamw: Update to 2.2.6.
new ae2b633f03 gnu: r-rmumps: Update to 5.2.1-36.
new f7704568e4 gnu: r-knitr: Update to 1.51.
new a00cc47bc1 gnu: r-knitrbootstrap: Update to 1.0.4.
new a7b953871a gnu: r-broom: Update to 1.0.11.
new f3f0cd2248 gnu: r-statsexpressions: Update to 1.7.2.
new cca142a6bd gnu: r-ordinal: Update to 2025.12-29.
new cddc582c1a gnu: r-mice: Update to 3.19.0.
new fef3a48c37 gnu: r-trycatchlog: Update to 1.3.3.
new 5def34c9a3 gnu: r-venndiagram: Update to 1.8.2.
new 5336c36efe gnu: r-nanoparquet: Update to 0.4.3.
new 5563c1d882 gnu: r-statnet-common: Update to 4.13.0.
new 0496e0060c gnu: r-tseries: Update to 0.10-59.
new eb955fd808 gnu: r-fbasics: Update to 4052.98.
new 18e411b54f gnu: r-simdesign: Update to 2.22.
new 1b473ca82e gnu: r-arules: Update to 1.7.13.
new b7e9477c07 gnu: r-fsa: Update to 0.10.1.
new 72fcec3544 gnu: r-ggseqlogo: Update to 0.2.2.
new 7b6b4f1f74 gnu: r-ggsci: Update to 4.2.0.
new cb17630260 gnu: r-itsadug: Update to 2.5.
new 38e473ab5c gnu: r-pupillometryr: Update to 0.0.7.
new 244b0df3cd gnu: r-officer: Update to 0.7.2.
new 9e13eb8a2e gnu: r-insight: Update to 1.4.4.
new f41eb70f56 gnu: r-nodbi: Update to 0.14.0.
new 9258c23be7 gnu: r-abcrf: Update to 2.0.
new 2a5a73d998 gnu: r-gam: Update to 1.22-7.
new b52738fa94 gnu: r-superlearner: Update to 2.0-40.
new 4cae289df4 gnu: r-dofuture: Update to 1.1.3.
new 335ce72145 gnu: r-svdialogs: Update to 1.1.2.
new ef54df7157 gnu: r-emmeans: Update to 2.0.1.
new 272f37c8e9 gnu: r-bayesplot: Update to 1.15.0.
new 0278fb3b9b gnu: r-tmb: Update to 1.9.19.
new 2f4a260e03 gnu: r-ggeffects: Update to 2.3.2.
new 4933d343a0 gnu: r-gert: Update to 2.3.1.
new 90d0c7b03d gnu: r-mvabund: Update to 4.2.8.
new 120e9f185d gnu: r-afex: Update to 1.5-1.
new 22f4026e59 gnu: r-fmesher: Update to 0.6.1.
new d6acf504d7 gnu: r-tm: Update to 0.7-17.
new 2aeac4d912 gnu: r-tidytree: Update to 0.4.7.
new a1d55af8a3 gnu: r-sparsevctrs: Update to 0.3.5.
new ae35e4af6c gnu: r-rncl: Update to 0.8.8.
new ac66d7b1c2 gnu: r-gmisc: Update to 3.1.0.
new 406c22d9e3 gnu: r-spam: Update to 2.11-3.
new a95fd20fe3 gnu: r-future-apply: Update to 1.20.1.
new 5e1a72bac0 gnu: r-shinybs: Update to 0.63.0.
new 8fe3b74114 gnu: r-testit: Update to 0.15.
new 60698c7510 gnu: r-msir: Update to 1.4.
new 24198e49c4 gnu: r-lavaan: Update to 0.6-21.
new a16e39f22f gnu: r-pegas: Update to 1.4.
new dddae29502 gnu: r-bqtl: Update to 1.0-39.
new d17eabb557 gnu: r-bookdown: Update to 0.46.
new 8ab066555a gnu: r-gggenes: Update to 0.6.0.
new f51dd5f10b gnu: r-arrow: Update to 22.0.0.1.
new 1f2bb7a903 gnu: r-sctransform: Update to 0.4.3.
new 9eefdce9f4 gnu: r-blme: Update to 1.0-7.
new 75adfa609f gnu: r-leidenbase: Update to 0.1.36.
new 665f3fcfa0 gnu: r-terra: Update to 1.8-93.
new 745b1bb81e gnu: r-lifecycle: Update to 1.0.5.
new 1964a4b0a9 gnu: r-r-devices: Update to 2.17.3.
new ef531913fd gnu: r-hdrcde: Update to 3.5.0.
new c8b88a107e gnu: r-imager: Update to 1.0.8.
new 65ba723e91 gnu: r-anthropometry: Update to 1.21.
new a948d89077 gnu: r-knn-covertree: Update to 1.1.
new f71d724bf8 gnu: r-forecast: Update to 9.0.0.
new 22fd2584ae gnu: r-polycor: Update to 0.8-2.
new a14e7f12f3 gnu: r-butcher: Update to 0.4.0.
new f7a09a2fff gnu: r-rsconnect: Update to 1.7.0.
new 1c308cc7a8 gnu: r-rstantools: Update to 2.6.0.
new a4da265934 gnu: r-kendall: Update to 2.2.2.
new f4ef3dd41e gnu: r-projpred: Update to 2.10.0.
new 89bdb18c3c gnu: r-shapforxgboost: Update to 0.2.0.
new 7acde0c2d8 gnu: r-spatstat-utils: Update to 3.2-1.
new 92a732d144 gnu: r-clusterr: Update to 1.3.6.
new 0f2d2e59f9 gnu: r-nanoarrow: Update to 0.7.0-2.
new c9a13cd975 gnu: r-tidypredict: Update to 1.0.1.
new d133c180c1 gnu: r-parsnip: Update to 1.4.1.
new 042c8610ef gnu: r-infer: Update to 1.1.0.
new cb5f38fdbe gnu: r-lsa: Update to 0.73.4.
new b250c7dc97 gnu: r-qtl: Update to 1.74.
new a4ea41970a gnu: r-seuratobject: Update to 5.3.0.
new 7313f6c9aa gnu: r-seurat: Update to 5.4.0.
new b50717b15f gnu: r-mlr3: Update to 1.3.0.
new c4f8616c0a gnu: r-mlr3learners: Update to 0.14.0.
new 0c0e2f0f30 gnu: r-mlr3tuning: Update to 1.5.1.
new ae530205e1 gnu: r-highlight: Update to 0.5.2.
new 3f51967e54 gnu: r-stars: Update to 0.7-0.
new f03c53e192 gnu: r-delaporte: Update to 8.4.3.
new 6a936ef741 gnu: r-vgam: Update to 1.1-14.
new d8de8c03a4 gnu: r-tesseract: Update to 5.2.4.
new e146dffe2f gnu: r-rlang: Update to 1.1.7.
new bc57331318 gnu: r-tibble: Update to 3.3.1.
new ec9e0e163f gnu: r-rcpparmadillo: Update to 15.2.3-1.
new 764aeda400 gnu: r-tidyr: Update to 1.3.2.
new e51bce74c8 gnu: Add r-tidydr.
new 8530c0098b gnu: r-screpertoire: Update to 2.6.2.
new c4f407005a gnu: r-txdbmaker: Update to 1.6.2.
new dfdefad022 gnu: r-reactome-db: Update to 1.95.0.
new 5b63b6ceb6 gnu: r-systempiperdata: Update to 2.14.2.
new 62cf89ebb1 gnu: r-anvil: Update to 1.22.3.
new 0dedefe6a5 gnu: r-atena: Update to 1.16.1.
new e91c2436bb gnu: r-escape: Update to 2.6.2.
new f51536ec8a gnu: r-immapex: Update to 1.4.3.
new 6187a4b15c gnu: r-edger: Update to 4.8.2.
new de55053147 gnu: r-enhancedvolcano: Update to 1.28.2.
new aa70aec7ba gnu: r-genomeinfodb: Update to 1.46.2.
new 1983d614d8 gnu: r-genomicranges: Update to 1.62.1.
new 51366470dd gnu: r-gsva: Update to 2.4.4.
new 419fa16cb1 gnu: r-rcy3: Update to 2.30.1.
new c5fb1699ae gnu: r-rhdf5: Update to 2.54.1.
new 3183caa48a gnu: r-rtracklayer: Update to 1.70.1.
new 967fa3bebd gnu: r-sesame: Update to 1.28.1.
new 26046db011 gnu: r-tcgautils: Update to 1.30.2.
new 3de9a5ca19 gnu: r-transcriptr: Update to 1.38.3.
new 70482b6826 gnu: r-spectra: Update to 1.20.1.
new 849d9c683e gnu: r-systempiper: Update to 2.16.3.
new 5763557995 gnu: r-tximport: Update to 1.38.2.
new ec6eacbaff gnu: r-zellkonverter: Update to 1.20.1.
new b718d73c68 gnu: r-graph: Update to 1.88.1.
new 2536e5fc3e gnu: r-ggtree: Update to 4.0.4.
new 4c336c1f64 gnu: r-fgsea: Update to 1.36.2.
new 63d4849290 gnu: r-enrichplot: Update to 1.30.4.
new 151565ad4f gnu: r-clusterprofiler: Update to 4.18.4.
new 33617f7077 gnu: r-yapsa: Update to 1.36.1.
new 09a13d7978 gnu: r-wppi: Update to 1.18.0.
new 2b7cfa4c22 gnu: r-flowcore: Update to 2.22.1.
new faf7c1019c gnu: r-ggcyto: Update to 1.38.1.
new 86b2cbaaec gnu: r-flowworkspace: Update to 4.22.1.
new 8a1fc11cdc gnu: r-variancepartition: Update to 1.40.1.
new bd6b3e6df6 gnu: r-ucsc-utils: Update to 1.6.1.
new 834075237e gnu: r-bioccheck: Update to 1.46.3.
new 5f01d1c422 gnu: r-s4arrays: Update to 1.10.1.
new 99b2a8c5f9 gnu: r-h5mread: Update to 1.2.1.
new c9f948ce50 gnu: r-sparsearray: Update to 1.10.8.
new 5d00090f05 gnu: r-mscoreutils: Update to 1.22.1.
new 300f9ac160 gnu: r-bayesspace: Update to 1.20.2.
new 54da52a62c gnu: r-tximeta: Update to 1.28.1.
new 4aedbfc3f7 gnu: r-msnid: Disable one test.
new 4717268f99 gnu: r-signac: Update to 1.16.0-1.f5a8411.
new 620d422301 gnu: Add r-rarr.
new 36d0937fa3 gnu: r-zarrdataframe: Update to 0.0.0-2.84c7db2.
new 78b6d472be gnu: r-qs: Skip another test.
new 226da2ca10 gnu: r-pizzarr: Update to 0.1.0-2.5f47057.
new 7632847c2c gnu: r-zarrarray: Update to 1.0-2.3cc3e6a.
new 0cc3eb6cac gnu: r-rnifti: Update to 1.9.0.
new cf68d3ff53 gnu: r-rcppannoy: Update to 0.0.23.
new ef900b0054 gnu: r-manipulatewidget: Update to 0.11.2.
new da37f3056d gnu: r-vctrs: Update to 0.7.0.
new 6d28170c77 gnu: r-stringdist: Update to 0.9.17.
new 0aff377885 gnu: r-extradistr: Update to 1.10.0.2.
new adee931e79 gnu: r-stringfish: Update to 0.18.0.
new 21834ea62e gnu: r-netgsa: Update to 4.0.7.
new 7a4421574b gnu: r-blob: Update to 1.3.0.
new 28d340ced8 gnu: r-fpc: Update to 2.2-14.
new 2acd86b6b5 gnu: r-prabclus: Update to 2.3-5.
new e3b0d64ea8 gnu: r-benchmarkmedata: Update to 2.0.0.
new e8c46523e8 gnu: r-clock: Update to 0.7.4.
new 44ad6947a6 gnu: r-ggpp: Update to 0.6.0.
new c95cbb403b gnu: r-snowflakeauth: Update to 0.2.1.
new 5191159455 gnu: r-survival: Update to 3.8-6.
new ffe419c002 gnu: r-polylabelr: Update to 1.0.0.
new 1e2012490f gnu: r-grandr: Update to 0.2.7.
new 80b0ce607f gnu: r-tglkmeans: Update to 0.5.8.
new 314a88ed73 gnu: r-secretbase: Update to 1.1.1.
new a39feed820 gnu: r-ggtangle: Update to 0.1.1.
new e07720582e gnu: r-rcppspdlog: Update to 0.0.26.
new 0e1d9905e2 gnu: r-rcppthread: Update to 2.3.0.
new 688c8c49c5 gnu: r-ctrdata: Update to 1.26.0.
new e07debf9e1 gnu: r-fastmatch: Update to 1.1-8.
new 042399644b gnu: r-xfun: Update to 0.56.
new e9b055c590 gnu: r-rappdirs: Update to 0.3.4.
new 3f36265033 gnu: r-renv: Update to 1.1.6.
new b9afde0a1e gnu: r-factominer: Update to 2.13.
new 8fd48e930f gnu: r-officer: Update to 0.7.3.
new 5bcb6e1775 gnu: r-dofuture: Update to 1.2.0.
new 7913a58aa0 gnu: r-ggformula: Update to 1.0.1.
new 4fe2e1a7b5 gnu: r-glmmtmb: Update to 1.1.14.
new e917030865 gnu: r-lmertest: Update to 3.2-0.
new 5a694c247e gnu: r-isorix: Update to 0.9.4.
new fe5a2030e4 gnu: r-future: Update to 1.69.0.
new 8dc7ffc270 gnu: r-shinyjs: Update to 2.1.1.
new 1b1890e953 gnu: r-sf: Update to 1.0-24.
new c770549ed1 gnu: r-xml2: Update to 1.5.2.
new f26fae34b4 gnu: r-xgboost: Update to 3.1.3.1.
new 969b63a882 gnu: r-alabama: Update to 2025.1.0.
new 1b244bb92c gnu: r-actfrag: Update to 0.1.2.
new a4e01eede7 gnu: r-expint: Update to 0.2-0.
new adbd43b1f5 gnu: r-rcdd: Update to 1.6-1.
new 461515b09e gnu: r-distributional: Update to 0.6.0.
new fb0f8c9ba9 gnu: r-spatstat-univar: Update to 3.1-6.
new ed82dfc663 gnu: r-warp: Update to 0.2.3.
new b02ffb8130 gnu: r-lwgeom: Update to 0.2-15.
new ab19a4b9aa gnu: r-paws-common: Update to 0.8.8.
new 73d0aa7ae3 gnu: r-rstudioapi: Update to 0.18.0.
new 891f727e16 gnu: r-segmented: Update to 2.2-0.
new c972b15173 gnu: r-ranger: Update to 0.18.0.
new ba1536b46e gnu: r-flames: Update to 2.4.2.
new 4bb7387297 gnu: r-pcatools: Update to 2.22.1.
The 305 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
gnu/packages/bioconductor.scm | 282 +++++----
gnu/packages/bioinformatics.scm | 49 +-
gnu/packages/cran.scm | 1280 ++++++++++++++++++++++-----------------
gnu/packages/duckdb.scm | 6 +-
gnu/packages/statistics.scm | 50 +-
5 files changed, 945 insertions(+), 722 deletions(-)
