guix_mirror_bot pushed a change to branch master
in repository guix.
from 1f631d6d15 manifest: Add codeberg-cli.
new fcbf2548a1 gnu: Remove python-fusepyng.
new 077ba95865 gnu: netcdf: Remove hdf4 input.
new 01201258bc gnu: imv: Update to 5.0.1.
new 678f0389ab gnu: muon: Update to 0.5.0.
new 12c86daece gnu: zeal: Remove unreferenced Qt5 input.
new fb3a094ae7 gnu: python-django: Update to 5.2.9 to fix CVEs.
new dfa5810754 gnu: qtkeychain, qtkeychain-qt6: Update to 0.15.0.
new d15d7709be gnu: qxmpp: Update to 1.12.0.
new 18023c0a95 gnu: kaidan: Update to 0.13.0.
new 59ff16c9e1 gnu: Add fusion.
new e184429c15 gnu: emacs-lobsters: Update to 1.2.
new 6554fce76b gnu: emacs-marginalia: Update to 2.6.
new 927cad0854 gnu: emacs-cape: Update to 2.4.
new 9eed39b841 gnu: python-platypush: Update to 1.3.14.
new 2edff5724b gnu: webssh: Fix build.
new 4f82eba196 gnu: webssh: Update to 1.6.3.
new 7472e6c3fd gnu: clustershell: Update to 1.9.3.
new 2e25daf39d gnu: gnumach: Don't truncate kernel messages.
new b2ada25a26 gnu: hurd: Fix select for streamio.
new 73899752f8 system: hurd: Switch to the Shepherd’s system log.
new 93139a4d64 gnu: guix-modules: Update to 0.3.0.
new 29fbc0c3f7 gnu: zint: Update to 2.16.0.
new 1445f22f4f gnu: zint: Split Qt GUI into distinct zint-with-qt package.
new 4076de869e gnu: libunistring: Resurrect cross-build for MinGW.
new 4fa29f3bed git-authenticate, inferior: Autoload Git modules.
new 15f87a0f03 describe: Define and use ‘modules-from-current-profile’.
new 7f46cd4bec gnu: texlive: Deprecate in favor of texlive-scheme-full.
new 17f8e88819 gnu: xiphos: Refresh deprecated input.
new 8bdbfc13ff gnu: asciinema: Update to 3.0.1.
new d8ceb03b4b gnu: bmake: Update to 20251111.
new f87c5073ea gnu: bmake: Run tests in check phase.
new 5b41ff4418 gnu: wget2: Update to 2.2.1.
new 0e96e24b4b gnu: ddrescue: Update to 1.30.
new 8342e5dbc9 gnu: sage: Add missing standard inputs.
new 92218e6195 gnu: libgit2-glib: Update to 1.2.1.
new 306495b073 gnu: marble-qt: Rename to marble.
new 4eef47d0e8 gnu: gpsd: Update to 3.27.3.
new e517cb398f gnu: gpsd: Switch to Qt6.
new 4c1855fee3 gnu: mkvtoolnix: Update to 97.0
new fbb1b92560 gnu: pythonscad: Update to 0.8.4.
new 5a4c954f63 gnu: pythonscad: Improve style.
new 933c9ecb62 gnu: Add python-setuptools-79.
new afd189764f gnu: python-cython: Update to 3.1.7.
new ad5eb3f758 gnu: Add python-cython-next.
new d0ce5306aa gnu: python-numpy: Set NumPy 2 as default.
new c0244f858b gnu: python-numpy-2: Deprecate by python-numpy.
new e76cbbc8ac gnu: python-httptools: Update to 0.7.1.
new e0ae141759 gnu: python-matplotlib: Update to 3.10.8.
new b4cd49d18e gnu: python-pandas: Update to 2.3.3.
new d601af10bd gnu: python-msgpack: Update to 1.1.2.
new 859e9fd56f gnu: python-scipy: Update to 1.16.3.
new 92a0723389 gnu: python-pytest-regressions: Update to 2.8.3.
new 9f85662729 gnu: python-pytest-regressions: Move to python-check.
new c3942b7deb gnu: python-h5py: Update to 3.15.1.
new b5dd854f74 gnu: python-blosc: Adjust inputs.
new 26ecbf391a gnu: python-setuptools-scm-next: Undeprecate.
new c01a759816 gnu: python-dask: Update to 2025.11.0.
new 82bdd73b7c gnu: Add python-typing-inspection.
new b715e332d9 gnu: Add python-pytest-run-parallel.
new 01e1779319 gnu: python-pydantic-core: Update to 2.41.5.
new 2a9429b715 gnu: python-pydantic: Update to 2.12.5.
new c3aefebcef gnu: Add python-pydantic-1.
new a0ed2482e4 gnu: python-pydantic-2: Deprecate by python-pydantic.
new a611ae225d gnu: python-nbval: Reduce closure size.
new 10e0de596b gnu: python-scikit-learn: Update to 1.7.2.
new 9beaa9ef7e gnu: python-distributed: Update to 2025.11.0.
new f0c14fa2a2 gnu: python-numexpr: Update to 2.14.1.
new 94d5cc2406 gnu: python-ndindex: Update to 1.10.1.
new ae92a189ff gnu: c-blosc2: Update to 2.22.0.
new 8fd5ccc87b gnu: python-blosc2: Update to 3.12.2.
new f48805713f gnu: netcdf: Update to 4.9.2.
new d7572ac7e1 gnu: python-netcdf4: Update to 1.7.2.
new bc311d8500 gnu: python-pydantic-settings: Update to 2.12.0.
new eb0c092037 gnu: python-casa-formats-io: Fix tests.
new af43879732 gnu: Add python-ulid.
new 8f13bd0dca gnu: Add python-cron-converter.
new 0f86974f08 gnu: Add python-annotated-doc.
new a6d97ad989 gnu: Add python-pydantic-extra-types.
new b052a8626e gnu: python-fastapi: Update to 0.124.0.
new 5de81642cf gnu: python-astropy-6: Skip some tests.
new d855d82eb2 gnu: python-xmp-toolkit: Update to 2.1.0.
new 159359dcf2 gnu: python-django-ninja: Update to 1.5.1.
new 0dfb6a47a3 gnu: python-dendropy: Update to 5.0.8.
new 782d532a40 gnu: python-algopy: Update to 0.7.2.
new a4d4d6af00 gnu: python-cloudpathlib: Fix tests.
new 32109ddea4 gnu: python-stwcs: Remove relax-requirements phase.
new d32d3fbd49 gnu: python-astroml: Fix build.
new 4c16c28f74 gnu: python-guardpost: Update to 1.0.4.
new ae7c11b6c6 gnu: Add python-py3exiv2.
new 0c660133df gnu: didjvu: Update to 0.11.0.
new 6405ea2b2a gnu: python-blacksheep: Update to 2.4.5.
new 237c3799c6 gnu: checkm: Update to 1.2.4.
new 5981d7c0b1 gnu: blender: Use python-numpy@1.
new 0f56b8222a gnu: python-cesium: Update to 0.12.4.
new 1a8c17b352 gnu: python-ctapipe: Update to 0.28.0.
new 376056617d gnu: python-nox: Update to 2025.11.12.
new 6f9d625bce gnu: python-esutil: Fix build with gcc-14.
new 8392c834c8 gnu: genetic: Use python-pynbody@2.
new 1ea1298bba gnu: python-fgivenx: Update to 2.4.2-0.cf51dbf.
new 96426dc57d gnu: python-gwcs: Remove relax-requirements phase.
new 12b20ce371 gnu: python-jwst: Remove relax-requirements phase.
new 3ff9ea72f4 gnu: python-astrodata: Use python-numpy@1.
new 3f3aaa0009 gnu: python-fits-schema: Update to 0.5.6-0.ccffe04.
new 22239043a7 gnu: python-scikit-image: Update to 0.25.2.
new 75d3068065 gnu: python-scikit-image-next: Deprecate by
python-scikit-image.
new 43bce7f38c gnu: python-statmorph: Adjust inputs.
new fd00d2ad5d gnu: python-jacobi: Fix tests.
new e4c3339f63 gnu: python-zodipy: Remove relax-requirements phase.
new 3dca03a7f3 gnu: python-kanon: Use python-numpy@1.
new 193542ade1 gnu: python-linetools: Skip 2 tests.
new 02ec34ddb5 gnu: cpat: Update to 3.0.5.
new 02b4dc1b34 gnu: python-annoy: Add python-h5py.
new 21dc181918 gnu: python-tables: Update to 3.10.2-0.aad9079.
new fb67f784f4 gnu: pyscenic: Update to 0.12.1-2.06bafba4.
new 24271778fa gnu: python-llvmlite: Update to 0.45.0.
new 42df9df17d gnu: python-numba: Update to 0.62.1.
new 32160d32e4 gnu: catch2: Update to 2.13.10.
new 5e05d60785 gnu: python-xarray: Update to 2025.12.0.
new 8dc07ea089 gnu: python-dask-image: Update to 2025.11.0.
new bcf332f060 gnu: python-reproject: Update to 0.19.0.
new 3f241ee939 gnu: python-spectral-cube: Update to 0.6.7.
new 2487914fbe gnu: python-xarray-einstats: Update to 0.9.1.
new 8648556deb gnu: python-naima: Update to 0.10.3.
new 602cf6ca46 gnu: python-arboreto: Update to 0.1.6-0.79f916b.
new 2d930d5a70 gnu: python-arviz: Update to 0.22.0.
new fa51fe801f gnu: python-cleanlab: Fix build.
new 300bb5936a gnu: python-pyopengl: Skip one test.
new 7533e089e7 gnu: python-modin: Update to 0.37.1.
new 3bdcc858e0 gnu: python-jwcrypto: Adjust inputs.
new 95cb3d1bb5 gnu: websockify: Update to 0.13.0.
new 814a335b47 gnu: veusz: Update to 4.2.
new af005403dc gnu: python-seaborn: Skip 3 tests.
new 5ef51a0820 gnu: python-glue-astronomy: Skip 3 tests.
new 0e1c6cecad gnu: Add python-lofar-parameterset.
new 3e4caa25a3 gnu: python-losoto: Update to 2.6.0.
new c49f801deb gnu: python-lofar-h5plot: Use python-numpy@1.
new 606e072449 gnu: python-meshio: Skip some tests.
new 74b52b1ad8 gnu: python-numdifftools: Update to 0.9.42.
new 5cd724f523 gnu: python-sunkit-spex: Update to 0.4.0-0.bb544c4.
new 446e2a34f8 gnu: python-kalepy: Skip 5 tests.
new b595d65965 gnu: python-regions: Update to 0.11.
new 2f52a550ba gnu: python-romancal: Remove relax-requirements phase.
new abe18178a7 gnu: python-hnswlib: Update to 0.8.0.
new 4a613db042 gnu: python-loompy: Update to 3.0.8.
new 761c0a21a1 gnu: urh: Use python-numpy@1.
new 9a1f731257 gnu: python-ase: Update to 3.26.0.
new 1c4775c27c gnu: python-asap3: Update to 3.13.10.
new fbbec15aac gnu: python-specutils: Remove relax-requirements phase.
new 6ee29be434 gnu: python-jmespath: Switch to pyproject.
new 9748ba26cd gnu: python-stcal: Adjust relax-requirments phase.
new b34db23b8a gnu: python-pytest-randomly: Update to 4.0.1.
new 4dfb9dde2a gnu: python-pytest-randomly: Move to python-check.
new ec3c031c3e gnu: python-pytest-doctestplus: Update to 1.6.0.
new 6bdf5f3b66 gnu: python-pythran: Clean up artifacts.
new 659477ffe0 gnu: python-contourpy: Update to 1.3.3.
new 2bb291679b gnu: python-ipython: Update to 9.8.0.
new c699eb12d9 gnu: Add python-ipython-minimal.
new adb2e90001 gnu: python-jupyter-core: Move to jupyter.
new 5136864a3f gnu: python-jupyter-core: Update to 5.9.1.
new 4a41327e07 gnu: python-jupyter-client: Simplfy bootstrapping.
new 6e8d2d28e9 gnu: python-jupyter-client: Move to jupyter.
new 7289e6b16e gnu: Remove python-jupyter-console-minimal.
new e0b4ea8b85 gnu: Add python-pytest-jupyter-minimal.
new 80522b714d gnu: python-jupyter-client: Update to 8.7.0.
new d1190851bb gnu: python-ipykernel: Update to 7.1.0.
new d7ea14f8cd gnu: python-jupyter-console: Update to 6.6.3.
new c05faf2d26 gnu: python-jupyter-console: Move to jupyter.
new e96c1f3cc4 gnu: Add python-jupyter-client-7.
new 81f2adac9b gnu: python-notebook: Fix build.
new c76fbf401d gnu: python-pycollada: Update to 0.9.2.
new 7e351da8ef gnu: python-pynbody: Use python-ipython-minimal for tests.
new e991e91871 gnu: crossmap: Update to 0.7.3.
new b014942a69 gnu: python-awkward-cpp: Update to 47.
new fa6ac5c111 gnu: python-awkward: Update to 2.8.5.
new 917b81c8b0 gnu: python-anndata: Update to 0.12.7.
new 364278b1ca gnu: Add python-anndata-minimal.
new deac84b29e gnu: python-biom-format: Update to 2.1.17.
new af61727fd2 gnu: endgame-singularity: Update to 1.1.
new 9d660798bd gnu: python-scikit-bio: Update to 0.7.1.post1.
new bd1885af17 gnu: Add python-diptest.
new 38b3b8cba6 gnu: pyscenic: Add missing python-diptest.
new fa85453127 gnu: python-pandera: Update to 0.27.1.
new 09407e2013 gnu: python-fbpca: Fix tests.
new 3228266ed5 gnu: python-biopython: Update to 1.86.
new 18cc69a875 gnu: python-statsmodels: Update to 0.14.5.
new 65a250d35f gnu: python-scanpy: Update to 1.11.5.
new ac2544a69d gnu: python-circe: Update to 0.3.9.
new 44efd7c77b gnu: python-cooler: Update to 0.10.4.
new 0d78581ee6 gnu: python-coolbox: Update to 0.3.9.
new ada8242a71 gnu: htseq: Update to 2.0.9.
new 0d064349e5 gnu: python-vaex-core: Update to 4.19.0.
new 7dd4976d83 gnu: python-jupyterlab-widgets: Update to 3.0.12.
new c32af5bb5f gnu: python-ipywidgets: Update to 8.1.4.
new b12b30278c gnu: Add python-array-api-strict.
new 315909345f gnu: python-plotly: Update to 5.24.1.
new 54bf0a4d59 gnu: python-pyudev: Update to 0.24.4.
new c8d5ee01f2 gnu: python-numpoly: Update to 1.3.4.
new bb97a094ea gnu: python-chaospy: Update to 4.3.21.
new f6280d1456 gnu: tangos: Update to 1.11.0.
new 798427c6be gnu: Remove python-eventio-1.
new 62d54203dc gnu: Add qdldl.
new 4b685e21c4 gnu: Add osqp.
new f5f6311d34 gnu: python-osqp: Update to 1.0.5.
new e80a101d83 gnu: Add scs.
new 6d3c8b3e42 gnu: python-scs: Update to 3.2.10.
new a869caec91 gnu: python-cvxpy: Update to 1.7.5.
new b5a9dbc129 gnu: python-fastcluster: Update to 1.3.0.
new bbb4b9fedc gnu: Add python-lsprotocol.
new 3de553049d gnu: Add python-pygls.
new bbc241a1a4 gnu: python-crosshair: Update to 0.0.101.
new 9d51f4ba01 gnu: python-metacells: Simplify.
new 1cc6355303 gnu: python-verde: Update to 1.8.1.
new 8aa80ded78 gnu: Add python-pyunlocbox.
new 193c758ca6 gnu: python-pygsp: Update to 0.6.0.
new 0bf1c3acae gnu: python-graphtools: Update to 2.1.0.
new dac41e9f25 gnu: python-fcsparser: Use python-numpy@1.
new a7c487a04a gnu: Add python-scprep.
new f7c56e273e gnu: python-magic-impute: Update to 3.0.0.
new db7594b1fc gnu: python-cooltools: Update to 0.7.1.
new dcc7504145 gnu: python-cnmf: Update to 1.7.0.
new 69988a0d63 gnu: idr: Fix build.
new 8364dce5fd gnu: mageck: Use python-numpy@1.
new c94d575576 gnu: python-captum: Update to 0.8.0-0.4fade3a.
new 940fd33cad gnu: python-cellbender: Update to 0.3.2.
new 64714dcd17 gnu: macs-3: Update to 3.0.3.
new 8cd522db2b gnu: python-brian2: Update to 2.10.1.
new 80ea353362 gnu: python-presto: Improve package, fix tests.
new e0ee924579 gnu: Add python-apricot-select.
new d4ebd06e80 gnu: python-pomegranate: Update to 1.1.0.
new 5bddbae693 gnu: python-pomegranate: Move to machine-learning.
new 4a9ba2e094 gnu: python-pyfaidx: Update to 0.9.0.3.
new 80ccda6a0b gnu: cnvkit: Update to 0.9.12-0.52f367b.
new b80dbd7d43 gnu: piglit: Use python-numpy@1.
new 6a72d3c12f gnu: python-tdda: Skip one more test.
new c2aabd9cff gnu: python-deepdish: Use python-numpy@1.
new 8c36020e02 gnu: python-deeptools: Update to 3.5.6.
new 9448d50d2c gnu: python-funsor: Update to 0.4.6.
new 38b8260a4d gnu: python-mygene: Switch to pyproject.
new 02c6d0183f gnu: python-drep: Update to 3.6.2-0.7b4b8fb.
new b5a17d721a gnu: Add python-stregion.
new 2a45091b75 gnu: python-drizzlepac: Update to 3.10.0-0.e01563c.
new 393388cdd2 gnu: python-gizmo-analysis: Remove relax-requirements phase.
new 6cb925c92b gnu: python-sep: Remove relax-requirements phase.
new 90101deabb gnu: python-sncosmo: Adjust phases.
new bd11aa5b67 gnu: python-specreduce: Remove relax-requirements phase.
new b6081f0be5 gnu: python-utilities-awetzel: Remove relax-requirements
phase.
new 9769cd732c gnu: python-episcanpy: Use python-numpy@1.
new 065980a401 gnu: python-fenics-ufl-2019: Use python-numpy@1.
new 561736d94d gnu: python-fenics-ffc: Use python-numpy@1.
new 7f0bd3f662 gnu: Add python-xarray-dataclass.
new d1a8c4e9e9 gnu: python-multiscale-spatial-image: Update to 2.0.3.
new d47b0599a8 gnu: Remove python-xarray-datatree.
new acf979160c gnu: python-glue-qt: Relax requirements for ipython version.
new 783da5d08c gnu: python-papermill: Reduce closure size; skip 2 tests.
new a22c6e5a0d gnu: python-vector: Update to 1.7.0.
new 9de58fc285 gnu: python-scikit-learn-1.6: Skip 3 more tests.
new 0c9929cba8 gnu: boost-numpy: Use python-numpy@1.
new b54008bb08 gnu: rdkit: Use python-numpy@1.
new 0a414ebdf7 gnu: python-paramz: Use python-numpy@1.
new dbcc162116 gnu: python-gpy: Use python-numpy@1.
new f615918c5a gnu: python-paramz Move to machinve-learning.
new 9fd736235e gnu: python-pysynphot: Update to 2.0.0-1.a5e76c3.
new 977d394a7f gnu: python-spisea: Use python-numpy@1.
new e6bfded109 gnu: python-scikit-surprise: Use python-numpy@1.
new 7563764ca7 gnu: Add python-statannotations.
new f052e98ac7 gnu: dolphin-emu: Use python-numpy@1.
new 24c7e7b216 gnu: coda: Use python-numpy@1.
new 3c6ce6a457 gnu: python-dcor: Use python-numpy@1.
new 5890db37f3 gnu: python-hdf5storage: Use pythno-numpy@1.
new 4ddb326475 gnu: python-hic2cool: Fix tests.
new eedd7f6593 gnu: scvelo: Update to 0.3.3.
new 574ccf4251 gnu: python-sbpy: Skip one doc test.
new 132e7c9782 gnu: pigx-scrnaseq: Use python-numpy@1.
new c5671bbd44 gnu: python-hicmatrix: Update to 17.2.
new 40b416e4db gnu: python-pygenometracks: Update to 3.9.
new a3c54627cf gnu: python-pyamg: Update to 5.3.0.
new 7e01f6e7e6 gnu: python-muon: Use python-numpy@1.
new e6405cf095 gnu: python-salib: Update to 1.5.2.
new dd363c0a8e gnu: python-pyfma: Use python-numpy@1.
new cd1e264ccf gnu: python-accupy: Use python-numpy@1.
new 8fdd8431d9 gnu: python-quadpy: Use python-numpy@1.
new c44fd4362e gnu: python-imagecodecs: Fix build.
new bd3e9489e6 gnu: python-libneuroml: Update to 0.6.7.
new bbc9e77630 gnu: python-watchfiles: Update to 1.1.1.
new b05b0f47de gnu: Add python-narwhals-minimal.
new ffbac2a24c gnu: python-narwhals: Update to 2.15.0.
new 5fcf8b1ea7 gnu: python-pyreadstat: Update to 1.3.2.
new c5c6e88486 gnu: python-pypika-tortoise: Update to 0.6.3.
new c70f57c702 gnu: python-tortoise-orm: Update to 0.25.3.
new 6877a2a08a gnu: python-hyperopt: Fix build.
new 3c140efabb gnu: python-iced: Update to 0.6.0.
new 8b10e6a14b gnu: python-decoupler: Update to 2.1.2.
new 5295c9c379 gnu: python-liana-py: Update to 1.6.1.
new 633c46178f gnu: python-pandas-stubs: Update to 2.3.3.251219.
new 154302d75e gnu: python-pytoolconfig: Reduce closure size.
new 9b5ca72a37 gnu: python-lifelines: Simplify tests.
new ee5e65c98d gnu: python-pysm3: Relax requirements for NumPy and SciPy.
new 180d543faa gnu: python-mathics-core: Use python-numpy@1.
new b6666118f5 gnu: python-metpy: Update to 1.7.1.
new 49a311e7bd gnu: python-numpysane: Use python-numpy@1.
new 6ebda1bd38 gnu: python-orthopy: Use python-numpy@1.
new f4179e549b gnu: Add python-uuid6.
new bab4c9c0e7 gnu: python-deepdiff: Update to 8.6.1.
new d831b20781 gnu: python-pandapower: Update to 3.3.0.
new 897d05749e gnu: python-peaks2utr: Use python-numpy@1.
new 4ae773f7d2 gnu: python-perfplot: Use python-numpy@1.
new 0211e3228e gnu: Remove python-statannot.
new 7cc0e5db3f gnu: Remove python-watchgod.
new 73f325be05 gnu: Remove python-webbpsf.
new 1ccc5e3ea7 gnu: Remove ginga-qt5.
new dffb2b21a4 gnu: Remove fanc.
new 14cc5cf42f gnu: openmm: Update to 8.4.0.
new b73f110a19 gnu: Remove python-dask-expr.
new 2d73089676 gnu: python-scikit-survival: Update to 0.26.0.
new 7161915f03 gnu: python-scikit-survival: Fix indentation.
new f2b9ff86a8 gnu: python-phenograph: Fix tests.
new 26436fba55 gnu: python-pingouin: Fix tests.
new 716fe2f4da gnu: python-pot: Update to 0.9.6.post1.
new 2e32e4941e gnu: python-pyemd: Use python-numpy@1.
new c7a670c50f gnu: python-pygam: Update to 0.12.0.
new 1bbcad4a91 gnu: python-fastparquet: Update to 2025.12.0.
new 60b2a82ea1 gnu: python-pytensor: Update to 2.36.3.
new 442937f2f8 gnu: python-pymc: Update to 5.27.0.
new b0d9ec0e8b gnu: openmm: Remove shaky tests.
new 9b3596ad81 gnu: python-pymol: Use python-numpy@1.
new 22e9f44d9c gnu: Add c-stdaux.
new 0a1838450b gnu: Add c-siphash.
new e9d7f7fb0c gnu: Add python-siphash24.
new 86b67f9879 gnu: python-pytools: Add missing propagated inputs, enable
tests.
new 2423fa65d1 gnu: python-nanobind: Update to 2.10.2.
new 701285e293 gnu: python-pyopencl: Update to 2026.1.
new 8d33302263 gnu: python-pysat: Skip more tests.
new a8a5a87a02 gnu: python-statmorph: Use python-numpy@1.
new 592b53a573 gnu: python-petrofit: Reduce closure size.
new f09b06229d gnu: python-qutip: Update to 5.2.2.
new e01c9d917d gnu: Remove music21.
new f3e3d90f2b gnu: python-cylp: Update to 0.94.0.
new f402e25674 gnu: python-timezonefinder: Use python-numpy@1.
new 35dce1ef55 gnu: python-mysql-connector-python: Skip one more test.
new fd7898ef45 gnu: python-genomepy: Update to 0.16.3.
new 5e5e1b95c7 gnu: Remove python-aioredis.
new 069fdefec8 gnu: Remove python-pynbody-1.
new 93001fcbd0 gnu: python-sphinx-autodoc-typehints: Update to 2.3.0.
new 9c42493979 gnu: python-coolbox: Fix inputs.
new dcca820951 gnu: scregseg: Skip 'sanity-check phase.
new 8a77fdc3f9 gnu: python-drep: Skip additional test.
new 8d565c65d5 gnu: python-pgmpy: Ignore flaky tests.
new c2a6e6acd9 gnu: python-pyts: Update to 0.13.0-0.4f3d97b.
new 430b98bfaf gnu: python-pyvista: Ignore failing test.
new fae2a5bb8f gnu: python-daemon: Replace python-lockfile by
python-filelock.
new ba94b24f93 gnu: python-cachecontrol: Remove python-lockfile
propagated-input.
new b7f4cf4f46 gnu: duplicity: Remove python-lockfile propagated-input.
new 0dfbb0894d build-system: python: Accept pyproject
package-with-explicit-python.
new 920e8a7344 gnu: python2-pycparser: Migrate to pyproject and decouple.
new da484bd577 gnu: python2-cffi: Migrate to pyproject and decouple.
new dc540ecc37 gnu: python2-cffi: Move to (gnu packages pypy).
new 58b25cc90b gnu: python2-pycparser: Move to (gnu packages pypy).
new fb5b733fa4 gnu: kapidox: Switch to pyproject.
new 4ee5d75ff4 gnu: xpra: Switch to pyproject.
new 8a7939711c gnu: qspectrumanalyzer: Switch to pyproject.
new de3f863638 gnu: pass-rotate: Switch to pyproject.
new 0a70c5790f gnu: jupyter: Switch to pyproject.
new c28ec26998 gnu: python-ipydatawidgets: Switch to pyproject.
new 78f8e9d760 gnu: fp16: Switch to pyproject.
new e292f21d68 gnu: quodlibet: Switch to pyproject.
new ab3fd8a4e8 gnu: z3: Switch to pyproject.
new a60fa26e89 gnu: python-django-allauth: Update to 65.13.1.
new 0bf7327d0e gnu: m8c: Update to 2.2.2.
new b11c3483c3 gnu: magic: Update to 8.3.590.
new a3630fbf54 gnu: python-crossenv: Update to 1.6.1.
new 7622a9909e gnu: python-jinja2-time: Switch to pyproject.
new a906bfacc3 gnu: python-notify2: Switch to pyproject.
new 441fa7921c gnu: python-pebble: Update to 5.1.3.
new 8e7144b14b gnu: python-emoji-for-gh-md-to-html: Switch to pyproject.
new c704e61297 gnu: python-jellyfish: Update to 1.2.1.
new 6435bf8cb7 gnu: python-pypeg2: Switch to pyproject.
new 63fe654f4e gnu: python-jinja2-time: Disable tests.
new 33692180e3 gnu: python-pyinotify: Switch to pyproject.
new bca7df248f gnu: python-dbusmock: Update to 0.37.2.
new 2f24bf2d68 gnu: Add python-unicode-linebreak.
new d97c693963 gnu: Add python-md-ulb-pwrap.
new c635555165 gnu: Add python-importlib-metadata-argparse-version.
new 18b7f23ef3 gnu: python-pymd4c: Update to 1.3.0.
new f5761684c3 gnu: mdpo: Update to 2.1.4.
new 655ab0ea1a gnu: mkbootimg: Switch to copy-build-system.
new 9558fe34d6 gnu: python-libevdev: Update to 0.13.1.
new d94936546a gnu: gnome-plots: Switch to pyproject.
new 03fd94c437 gnu: python-pyinotify: Reduce package closure size.
new e7d84d121e gnu: temper-exporter: Switch to pyproject.
new efb7ad1816 gnu: patatt: Switch to pyproject.
new b8e1f00f70 gnu: python-biothings-client: Update to 0.4.1.
new b61896c4b8 gnu: shirah: Switch to pyproject.
new cfa2edf13b gnu: grokmirror: Update to 2.0.12.
new 94185c13d1 gnu: nml: Switch to pyproject.
new c2a75f4031 gnu: python-domain-connect: Remove unused inputs.
new 2c7f573aa3 gnu: python-scanrbp: Include data in package.
new 952213a987 gnu: python-brian2tools: Fix build.
new c24223714e gnu: python-sphinx-autoapi: Update to 3.6.1.
new c09c950658 gnu: Remove hdf-eos2.
new 42bf1e75f4 gnu: Remove hdf-eos5.
new 2562c798a1 gnu: Remove gctp.
new 3c4b143249 gnu: Remove python-hdf4.
new 39c28edb9d gnu: Remove python-pyhdf.
new 5ff090a2b9 gnu: hdf4-alt: Disinherit from hdf4.
new 5521cba2e9 gnu: Remove hdf4.
new 883fb1e942 gnu: coda: Remove hdf4 input.
new 64acb4e65d gnu: Remove hdf4-alt.
new d118a89d62 tests: Adjust to Guile 3.0.10+.
new a43d32577d gnu: guile: Add 3.0.11.
new a6306eb0bc gnu: Bump rocm to version 7.1.0
new 12021475e8 gnu: python-xsge: Switch to pyproject.
new f1d764a801 gnu: calibre: Update to 8.16.2.
new e42ad05e32 gnu: python-geosketch: Update to 1.3.
new 8ec85a9ddf gnu: python-ruffus: Switch to pyproject.
new 578911c3cb gnu: weechat-wee-slack: Update to 2.11.0.
new 8c54a0bd12 gnu: python-librecaptcha: Switch to pyproject.
new 09a04a7b15 gnu: terminator: Switch to pyproject.
new 5d3684a594 gnu: python-pygame: Update to 2.6.1.
new c51b16f3a0 gnu: python-jsonnet: Switch to pyproject.
new f65c0f780c gnu: assword: Rename to impass.
new 2e3469379b gnu: python-tmx: Switch to pyproject.
new e60a997f62 gnu: python-liana-py: Don't propagate python-numpydoc.
new 766ac5a306 gnu: python-pynetdicom: Don't propagate python-numpydoc.
new 41e8641379 gnu: python-scikit-misc: Don't propagate python-numpydoc.
new 9e6c31bb10 gnu: fastfetch-minimal: Update to 2.57.0
new 64c2c052a0 gnu: quodlibet: Fix operon GI path.
new 374a52656f gnu: Add go-github-com-lmittmann-tint.
new e0d72d83c3 gnu: darkman: Update to 2.3.0.
new cc0f8c7ea7 gnu: Add python-flask-paginate.
new e6d1f85a91 gnu: libcap-ng: Update to 0.9.
new 4f6d69b4a1 gnu: libxapp: Switch to pyproject.
new 8ca97597fd gnu: python-xapp: Drop uneeded arguments.
new 04365b11c2 gnu: gemmi: Switch to pyproject.
new 4acb4ce02e gnu: createrepo-c: Switch to pyproject.
new 733ec52b07 gnu: rdkit: Switch to pyproject.
new 14dd2be407 gnu: electron-cash: Switch to pyproject.
new 5050f87e59 gnu: sugar: Switch to pyproject.
new a599cda324 gnu: sugar-datastore: Switch to pyproject.
new 3cc8a0405b gnu: hplip: Switch to pyproject.
new 43f548eb74 gnu: h-client: Switch to pyproject.
new 79a8ef238e gnu: python-pandas-flavor: Update to 0.8.1.
new c7eb8d113d gnu: python-pyjanitor: Update to 0.32.5.
new 0415cedcb3 gnu: python-celery: Fix build on CI.
new 7571448719 gnu: python-click-plugins-1: Add a maintenance note.
new 747028c4bd gnu: python-kombu: Update to 5.6.0.
new eb3665d177 gnu: python-celery: Update to 5.6.2.
new ef18864eb2 gnu: ringdecomposerlib: Switch to pyproject.
new aa0c014b92 gnu: gmsh: Switch to pyproject.
new 40386bc4f9 gnu: syncplay: Switch to pyproject.
new ef95b788b8 gnu: flair: Switch to pyproject.
new 92724857d4 gnu: mercurial: Switch to pyproject.
new 96e0ca2d57 gnu: hg-commitsigs: Switch to pyproject.
new daef26271f gnu: python-pypairix: Fix package.
new 4347565cb8 gnu: python-pytorch: Switch to pyproject.
new 4b6427549c gnu: python-pyspoa: Switch to pyproject.
new 0fe1bdc5cc gnu: python-pyxel: Switch to pyproject.
new b95afcbdd8 gnu: python-brian2tools: Switch to pyproject.
new 0c961fd0c9 gnu: Remove sqlcrush.
new aa6b488cb2 gnu: Remove python-sqlalchemy-stubs.
new 4f03b2f931 gnu: python-flask-cors: Update to 6.0.2.
new ad6ad493c7 gnu: python-forbiddenfruit: Fix build.
new fee0a68ca4 gnu: python-lief: Update to 0.17.2.
new 4970394310 gnu: Remove python-islenska.
new 9665a8cdc6 gnu: Remove xxkb.
new 030bd035ae gnu: Remove emacs-nyxt.
new 16838140fe gnu: Remove nyxt.
new 60853eb21d gnu: Fix reproducibility for some TeX Live packages.
new 54b3e929fd gnu: texlive build system: Install info files and man pages.
new 91fd9c908f gnu: beanquery: Ignore failing tests.
new 58b167230a gnu: beancount-3: Update to 3.2.0.
new eaad0a367b gnu: emacs-beancount: Update to 0.9.0-0.8a564f5.
new 9bc8786d1a gnu: kwallet: Correct input for Qt6.
new e304821c9a gnu: kmailcommon: Correct input for Qt6.
new 55c5b966e5 gnu: kget: Add qpgme input.
new c217af2dd5 gnu: qgpgme: Rename to qgpgme-qt5.
new d21acaccfc gnu: qgpgme-qt6: Rename to qgpgme.
new 340b82f4a8 gnu: Add emacs-vulpea.
new 0ba879beb1 gnu: qpwgraph: Update to 0.9.8.
new 70d09f028e etc: Add csantosb to reproduciblebuilds team.
new 9aca0e65ab gnu: python-pyzmq: Do not run flaky tests.
new d1834aa48f gnu: Add projectm-eval.
new 3adc17cb0f gnu: Add projectm.
new 500bc6ee9f gnu: Add projectm-presets.
new 69d79647a9 gnu: imgui: Keep binary_to_compressed_c.cpp.
new 5d714dddd4 gnu: Add projectm-sdl.
new 0127eada65 gnu: Remove dataparksearch.
new e16c8fcb5f gnu: mailcap: Update to 2.1.54.
new a98c0d94e8 gnu: mailcap: Modernize package style.
new fceafe200b gnu: gnupg: Update to 2.4.8.
new 43edd27353 gnu: libssh2: Update to 1.11.1.
new b4df8b64f2 gnu: libressl: Update to 4.2.1.
new 4b64f7eb10 gnu: libfido2: Update to 1.16.0.
new cfbf244bc8 gnu: nettle: Modernize.
new c6f7aba33c gnu: nettle: Update to 3.10.2.
new ccba2021ab gnu: python-gnupg: Update to 0.5.6.
new 501b1cc31d gnu: pcsc-lite: Update to 2.4.0
new c714bcadd2 gnu: ccid: Switch to meson-build-system
new 4a3f1ea19a gnu: m8c: Update to 2.2.3.
new dfdc319fe0 gnu: Add m8c-serial.
new 3173ca013b gnu: manifold: Update to 3.3.2.
new 6726274b29 gnu: pagmo: Update dependency on tbb.
new 3553b20b34 gnu: r-quanteda: Update dependency on tbb.
new 251694ed44 gnu: r-terra: Update dependency on tbb.
new acc6b128df gnu: mu: Update to 1.12.15.
new 5114260fc1 gnu: dyninst: Update dependency on tbb.
new 023b437f62 gnu: mold: Update dependency on tbb.
new ad308791d5 gnu: openscad: Update dependency on tbb.
new d00b6b46fd gnu: python-blacksheep: Update to 2.4.6.
new 668a75cadd gnu: python-liberty-parser: Update to 0.0.29.
new b9f0fd3317 gnu: verilator: Update to 5.044.
new b93c02327c gnu: sby: Update to 0.61.
new 2c41409383 gnu: eqy: Update to 0.61.
new c2a0ac60b8 gnu: mcy: Update to 0.61.
new 97232dd64c gnu: iverilog: Update to 20251012.
new e45b7a0d54 gnu: emacs-consult: Update to 3.2.
new 55d38f72d8 gnu: emacs-substitute: Update to 0.5.0.
new 3a81395fb6 gnu: cpuinfo: Update to 0.0-7.c4b4f4b.
new 2ba11b6128 gnu: beancount: Remove and replace by beancount-3.
new 817bdc3f61 gnu: mariadb: Fix max nproc in tests.
new 6307f79c7b gnu: vcmi: Update dependency on tbb.
new e5b1210e4c gnu: python-openturns: Update dependency on tbb.
new 22db59d243 gnu: easyeffects: Update dependency on tbb.
new e940b42af3 gnu: libgit2: Set default version to 1.9.
new 9933f6d4f9 gnu: Replace libgit2-1.9 with default libgit2 where
possible.
new d10105e35e gnu: Replace libgit2-1.8 with default libgit2 where possible
new ce3d9e8498 gnu: sqlitebrowser: Update to 3.13.1.
new 664aca5c8f gnu: sqlitebrowser: Use system nlohmann-json.
new 4c38f7bd73 gnu: python-pygit2: Rename to python-pygit2-1.11.
new 28e4b5fec4 gnu: python-pygit2-1.18: Rename to python-pygit2.
new af04ced82a gnu: patman: Update input.
new e86cabe575 gnu: gallia: Update input.
new f804b63d22 gnu: python-pypeit: Update input
new bb4b81a5c1 gnu: offlate: Update input.
new 7dffe07f67 gnu: openpmix: Fix home-page.
new 36d7ff6a78 gnu: opencolorio: Update input.
new bf6fe60ca8 gnu: Add apache-parent-pom-33.
new d260db04e2 gnu: Add apache-commons-parent-pom-78.
new ecd2182563 gnu: Add java-commons-io 2.21.
new 072eae9260 gnu: Add java-mime4j-core.
new 594d95260e gnu: Add java-jakarta-activation-api.
new bee338a65d gnu: Add java-axiom-base64-utils.
new a3af62ab56 gnu: Add java-axiom-xml-utils.
new 40ea1290e0 gnu: Add java-axiom-core-streams.
new 86182c7a4e gnu: Add java-axiom-weaver-annotations.
new 5adceb2384 gnu: Add java-axiom-api.
new 0ea321dd0e gnu: Add java-axiom-core-mixins.
new bd7a260f61 gnu: Add java-axiom-om-mixins.
new a74b678a99 gnu: Add java-axiom-dom-mixins.
new b3aa022f69 gnu: Add java-axiom-impl.
new e23e427595 gnu: Add java-saxon-he-10.
new ba29ecdb84 doc: Fix an URL.
new b20bf71e6f doc: Small rewording.
new 3da67d6d68 doc: Add an URL link.
new 176d0f6e52 gnu: pocl: Apply style and modernize.
new 261c1e6215 gnu: pocl: Update to 6.0.
new 036e70b60e gnu: ocl-icd: Update to 2.3.4.
new dc4fec16c9 gnu: clinfo: Update to 3.0.25.02.14.
new 22a001c577 gnu: Remove python-cleanlab-1.
new d759f941ac gnu: Remove aegis.
new 9aece7afd8 gnu: Remove cook.
new ac3ddab6a4 gnu: Remove bison-3.0.
new dd2b2e0970 gnu: Remove python-monotonic.
new 2ec55af1af gnu: Remove curseradio.
new ac3172abea gnu: krita: Update to 5.2.14.
new 4e1e5a5f77 gnu: python-ctranslate2: Update input.
new ede197cbbf gnu: Remove pybind11-2.10.
new f94e0b5111 gnu: emacs-ellama: Update to 1.10.11.
new faeb7870ed gnu: emacs-consult: Update to 3.3.
new 2ed7a414c5 gnu: emacs-marginalia: Update to 2.8.
new cd14c63de0 gnu: cuirass: Update to 1.3.4.
new 9656718b3f gnu: Rename ‘amdgpu-targets’ property and related bindings.
new 300343d834 gnu: rocm: Export ‘%default-amd-gpu-targets’ and
‘current-amd-gpu-targets’.
new 062f036fec gnu: clang-rocm: Add ‘compiler-amd-gpu-targets’ property.
new 0c5d65d540 transformations: Add ‘--amd-gpu’ transformation option.
new 82bdf9731e gnu: grim: Update to 1.5.0.
new c4c4fb0974 gnu: grim: Improve style.
new 9807cf3d5b gnu: grim: Fix URL.
new a4810cfb36 gnu: swayidle: Update to 1.9.0.
new ecaf51e335 gnu: swayidle: Modernize package style.
new 43aea78517 gnu: wl-mirror: Update to 0.18.3.
new e21894a6d7 gnu: wl-mirror: Improve style.
new 0793019611 licenses: Add Academic Free License v3.0.
new eabfae628a gnu: prjpeppercorn: Update to 1.9.
new ae801bead6 gnu: prjtrellis: Update to 1.4-1.92345b7.
new 8feb7cfa72 gnu: nextpnr: Update to 0.9-1.d8117e3.
new a260700405 gnu: php: Update to 8.5.2.
new 196d18cecd gnu: librdkafka: Update to 1.6.1.
new 082676ff2f gnu: Remove python-tmx.
new ebcaf54d3c gnu: libgrapheme: Update to 3.0.0.
new 836d970497 gnu: dwm: Update to 6.7.
new b2900166d6 gnu: python-cleanlab: Update to 2.9.0.
new 9d33dce9ca gnu: Add emacs-vui.
new 35be51ed67 gnu: Add emacs-vulpea-ui.
new a625d0c005 gnu: modglue, cadabra: Add notes to avoid deletion.
new a9ce3573f6 gnu: packages/golang-xyz: Sort variables a->z.
new d4338ae713 gnu: Add go-github-com-yaslama-go-wayland-wayland.
new b21e64fccd gnu: Add go-github-com-wifx-gonetworkmanager-v2.
new a5542da871 gnu: Add go-github-com-go-git-go-billy-v6.
new f2f5d6b884 gnu: Add go-github-com-go-git-gcfg-v2.
new 3f14684121 gnu: Add go-github-com-go-git-go-git-v6.
new 631803ebb5 gnu: Add dank-material-shell.
new 5a23aaceb2 gnu: go-github-com-emersion-go-webdav: Update to 0.7.0.
new 39f90ecd67 gnu: sogogi: Update to 0.0.0-1.e6fd81c.
new 530bf82a24 gnu: Add go-webdav.
new 7b319b00ac gnu: miniflux: Update to 2.2.16.
new ee88784373 gnu: fntsample, guix: Fix cosmetic typos.
new 6a5dd96e75 gnu: Add r-qvcalc.
new 97a498bc6f gnu: Add r-nlstools.
new 4aca2414d3 gnu: r-testthat: Update to 3.3.1.
new a1d32c2499 gnu: r-yaml: Update to 2.3.11.
new 663a92309c gnu: r-box: Update to 1.2.1.
new e64df24200 gnu: r-cards: Update to 0.7.1.
new 00842d3c40 gnu: r-ggbeeswarm: Update to 0.7.3.
new 6a4ab82872 gnu: r-ggthemes: Update to 5.2.0.
new f91816a9cb gnu: r-gplots: Update to 3.3.0.
new 839893de10 gnu: r-rpresto: Update to 1.4.8.
new 465b228744 gnu: r-runner: Update to 0.4.5.
new 2a55fd07ef gnu: r-bestnormalize: Update to 1.9.2.
new 8435b7d59e gnu: r-lme4: Update to 1.1-38.
new 698a142cc1 gnu: r-ggpmisc: Update to 0.6.3.
new f076e58389 gnu: r-mirai: Update to 2.5.3.
new 52daabf806 gnu: r-ggtangle: Update to 0.0.9.
new 2db7ef3b22 gnu: r-bindr: Update to 0.1.3.
new 09de77c824 gnu: r-globaloptions: Update to 0.1.3.
new 26312a8f1e gnu: r-getoptlong: Update to 1.1.0.
new b882f5de44 gnu: r-piton: Update to 1.0.1.
new e7a096abe1 gnu: r-doby: Update to 4.7.1.
new b530d77608 gnu: r-performance: Update to 0.15.3.
new 3df2970897 gnu: r-yulab-utils: Update to 0.2.2.
new 0729c109ba gnu: r-text2vec: Update to 0.6.6.
new dc65dfa5f3 gnu: r-xml2: Update to 1.5.1.
new e342408f2b gnu: r-xgboost: Update to 3.1.2.1.
new ced69ea688 gnu: r-patrick: Update to 0.3.1.
new e787f5cda5 gnu: r-spatstat-linnet: Update to 3.4-0.
new 074f690a93 gnu: r-spatstat: Update to 3.5-0.
new e02406a412 gnu: r-tidypredict: Update to 1.0.0.
new 78cc5bf270 gnu: r-parsnip: Update to 1.4.0.
new 04474bb758 gnu: r-vroom: Update to 1.6.7.
new 3954e19db5 gnu: r-exactextractr: Update to 0.10.1.
new 101609d307 gnu: r-rsqlite: Update to 2.4.5.
new 26feb50b83 gnu: r-rlrsim: Update to 3.1-9.
new d53af4de1f gnu: r-parallelly: Update to 1.46.1.
new 10344b4faf gnu: r-reformulas: Update to 0.4.3.1.
new e3ea2f43ab gnu: r-isoband: Update to 0.3.0.
new c7d4e4bc5d gnu: r-vim: Update to 7.0.0.
new 04774fcb90 gnu: r-timeseries: Update to 4052.112.
new 6c73f22a20 gnu: r-xfun: Update to 0.55.
new bcd6b6f0f8 gnu: r-latex2exp: Update to 0.9.8.
new 38563c127a gnu: r-roi: Update to 1.0-2.
new a1b849ed1c gnu: r-catdata: Update to 1.2.5.
new 186c591b5e gnu: r-extradistr: Update to 1.10.0.1.
new c57744dbe8 gnu: r-dbscan: Update to 1.2.4.
new f0b92d0087 gnu: r-e1071: Update to 1.7-17.
new 53ac4e7fdb gnu: r-purrr: Update to 1.2.1.
new fe00a50f28 gnu: r-httr2: Update to 1.2.2.
new 321edaca57 gnu: r-htmltools: Update to 0.5.9.
new 2cf0fec6ee gnu: r-geos: Update to 0.2.5.
new db5f70e92f gnu: r-feather: Update to 0.4.0.
new 21427d6a3f gnu: r-rcpp: Update to 1.1.1.
new ed94b38947 gnu: r-ctrdata: Update to 1.25.1.
new 61891d5066 gnu: r-litedown: Update to 0.9.
new fb8d1fc850 gnu: r-loo: Update to 2.9.0.
new 3c9156661b gnu: r-redland: Update to 1.0.17-19.
new 9c6161baab gnu: r-later: Update to 1.4.5.
new 5c9c466e09 gnu: r-wk: Update to 0.9.5.
new 59da6ae98a gnu: r-yaml: Update to 2.3.12.
new 4d0d2ea4c5 gnu: r-aster: Update to 1.3-7.
new 9c45cc8386 gnu: r-yulab-utils: Update to 0.2.3.
new e2f63032fe gnu: r-futile-logger: Update to 1.4.9.
new 1a12ac96e8 gnu: r-paletteer: Update to 1.7.0.
new 1ff1103e9b gnu: r-microbiomestat: Update to 1.3.
new ba7779c5e0 gnu: r-maxlik: Update to 1.5-2.2.
new a1792e5c2f gnu: r-vcr: Update to 2.1.0.
new 9149b5065c gnu: r-glmmtmb: Disable one test.
new 133fc25167 gnu: r-rmapshaper: Add update note.
new 89197234ae gnu: r-shinystan: Update to 2.7.0.
new b5b9b095dc gnu: r-duckdb: Update to 1.4.3.
new b690606bbe gnu: r-testthat: Update to 3.3.2.
new fb85d7476d gnu: r-bh: Update to 1.90.0-1.
new 2de22b9a20 gnu: r-cpp11bigwig: Update to 0.1.3.
new c14c1e8ae3 gnu: r-valr: Update to 0.9.1.
new ea1ae54d67 gnu: r-mutoss: Update to 0.1-14.
new b8556421bc gnu: r-metap: Update to 1.13.
new 0a8302fac7 gnu: r-abn: Update to 3.1.13.
new d079862872 gnu: r-cardx: Update to 0.3.1.
new f1bb5ab76a gnu: r-collapse: Update to 2.1.6.
new e4933e3d53 gnu: r-data-table: Update to 1.18.0.
new b27b3d68b6 gnu: r-earth: Update to 5.3.5.
new c1a9bcf4cb gnu: r-ggfittext: Update to 0.10.3.
new 9a48992456 gnu: r-ggstats: Update to 0.12.0.
new 22f293e70d gnu: r-ggstatsplot: Update to 0.13.4.
new 34a1f16ab6 gnu: r-robslopes: Update to 1.1.4.
new cc8314bd71 gnu: r-climaemet: Update to 1.5.0.
new e44daed7e0 gnu: r-climatol: Update to 4.4-0.
new 9047e365b3 gnu: r-zoo: Update to 1.8-15.
new 418c375e90 gnu: r-ggvenndiagram: Update to 1.5.7.
new fdfd09a92a gnu: r-oompabase: Update to 3.2.11.
new 28452096c6 gnu: r-plotfunctions: Update to 1.5.
new 919f5ce815 gnu: r-plotmo: Update to 3.7.0.
new 4c83a898f7 gnu: r-plumber: Update to 1.3.2.
new db80a632a9 gnu: r-ga: Update to 3.2.5.
new e5872164b9 gnu: r-mclogit: Update to 0.9.15.
new bbb3bfc888 gnu: r-astsa: Update to 2.4.
new e6984b10e0 gnu: r-secretbase: Update to 1.1.0.
new 440f984d6e gnu: r-selectr: Update to 0.5-1.
new ba55f4e5f6 gnu: r-hmisc: Update to 5.2-5.
new 89ae83575e gnu: r-fastglm: Update to 0.0.4.
new eab214cbe7 gnu: r-mbess: Update to 4.9.42.
new 9928ee8d19 gnu: r-ggtangle: Update to 0.1.0.
new ab897e0013 gnu: r-rcppcctz: Update to 0.2.14.
new 77229a8fa5 gnu: r-rcppspdlog: Update to 0.0.24.
new ce20c94340 gnu: r-audio: Update to 0.1-12.
new e7b97b2523 gnu: r-circlize: Update to 0.4.17.
new 48632dcd5d gnu: r-proxy: Update to 0.4-29.
new 5bdf1486d9 gnu: r-lamw: Update to 2.2.6.
new 82639a1519 gnu: r-rmumps: Update to 5.2.1-36.
new 559e112380 gnu: r-knitr: Update to 1.51.
new e4768b1716 gnu: r-knitrbootstrap: Update to 1.0.4.
new 4e43f85e95 gnu: r-broom: Update to 1.0.11.
new 88f2d875bd gnu: r-statsexpressions: Update to 1.7.2.
new 64a935feae gnu: r-ordinal: Update to 2025.12-29.
new 060ea92092 gnu: r-mice: Update to 3.19.0.
new 5f4702881b gnu: r-trycatchlog: Update to 1.3.3.
new af0ae84b4f gnu: r-venndiagram: Update to 1.8.2.
new f64db5d53c gnu: r-nanoparquet: Update to 0.4.3.
new c9d3d8c382 gnu: r-statnet-common: Update to 4.13.0.
new f274b676ec gnu: r-tseries: Update to 0.10-59.
new 331f92da19 gnu: r-fbasics: Update to 4052.98.
new 186d7a5967 gnu: r-simdesign: Update to 2.22.
new 4e4c7cdf0a gnu: r-arules: Update to 1.7.13.
new 89d682d8ff gnu: r-fsa: Update to 0.10.1.
new e52a3bf2f1 gnu: r-ggseqlogo: Update to 0.2.2.
new b767cee286 gnu: r-ggsci: Update to 4.2.0.
new 30c7c004ef gnu: r-itsadug: Update to 2.5.
new 8c438dc784 gnu: r-pupillometryr: Update to 0.0.7.
new 08b403ba33 gnu: r-officer: Update to 0.7.2.
new ffcbead651 gnu: r-insight: Update to 1.4.4.
new 057213255b gnu: r-nodbi: Update to 0.14.0.
new a4789dc4a3 gnu: r-abcrf: Update to 2.0.
new b333552527 gnu: r-gam: Update to 1.22-7.
new 6f4d8f6765 gnu: r-superlearner: Update to 2.0-40.
new 76b8876c8c gnu: r-dofuture: Update to 1.1.3.
new e9b79d130b gnu: r-svdialogs: Update to 1.1.2.
new a0f38c5bf7 gnu: r-emmeans: Update to 2.0.1.
new 248a792b57 gnu: r-bayesplot: Update to 1.15.0.
new 5294b9ced0 gnu: r-tmb: Update to 1.9.19.
new 3269e44104 gnu: r-ggeffects: Update to 2.3.2.
new 918af2ce37 gnu: r-gert: Update to 2.3.1.
new 148e3cf339 gnu: r-mvabund: Update to 4.2.8.
new 72c7990c1a gnu: r-afex: Update to 1.5-1.
new 1f471ab3cd gnu: r-fmesher: Update to 0.6.1.
new 7d3e66597e gnu: r-tm: Update to 0.7-17.
new 81c1c9a5f1 gnu: r-tidytree: Update to 0.4.7.
new 9ca4a25e7d gnu: r-sparsevctrs: Update to 0.3.5.
new 16e2863b0b gnu: r-rncl: Update to 0.8.8.
new a96b474030 gnu: r-gmisc: Update to 3.1.0.
new 0754ebdb48 gnu: r-spam: Update to 2.11-3.
new 6e41b0e880 gnu: r-future-apply: Update to 1.20.1.
new 5e6510da07 gnu: r-shinybs: Update to 0.63.0.
new 8871e3ccfa gnu: r-testit: Update to 0.15.
new f222f4d63f gnu: r-msir: Update to 1.4.
new e313ab9528 gnu: r-lavaan: Update to 0.6-21.
new 78771bf196 gnu: r-pegas: Update to 1.4.
new e4e7053589 gnu: r-bqtl: Update to 1.0-39.
new 496d77e1af gnu: r-bookdown: Update to 0.46.
new 46223ce28b gnu: r-gggenes: Update to 0.6.0.
new d3dd4635c7 gnu: r-arrow: Update to 22.0.0.1.
new a37984cb9f gnu: r-sctransform: Update to 0.4.3.
new 7e0ab6c845 gnu: r-blme: Update to 1.0-7.
new 2fc2bd577e gnu: r-leidenbase: Update to 0.1.36.
new f69bdd6c18 gnu: r-terra: Update to 1.8-93.
new e0dcebdf85 gnu: r-lifecycle: Update to 1.0.5.
new bd5db2a339 gnu: r-r-devices: Update to 2.17.3.
new efb80131db gnu: r-hdrcde: Update to 3.5.0.
new cd4ccfc4c6 gnu: r-imager: Update to 1.0.8.
new b32d6fdbff gnu: r-anthropometry: Update to 1.21.
new 250777aec9 gnu: r-knn-covertree: Update to 1.1.
new 9b48a5cb49 gnu: r-forecast: Update to 9.0.0.
new 7f70978fdb gnu: r-polycor: Update to 0.8-2.
new 3e4fdb626c gnu: r-butcher: Update to 0.4.0.
new 81da836c19 gnu: r-rsconnect: Update to 1.7.0.
new 5e45e7bdc1 gnu: r-rstantools: Update to 2.6.0.
new f9b4c3a8bb gnu: r-kendall: Update to 2.2.2.
new 326a9d7ed2 gnu: r-projpred: Update to 2.10.0.
new ad1ed7dded gnu: r-shapforxgboost: Update to 0.2.0.
new ede81b0ad0 gnu: r-spatstat-utils: Update to 3.2-1.
new 303599d63e gnu: r-clusterr: Update to 1.3.6.
new 7b7b2843eb gnu: r-nanoarrow: Update to 0.7.0-2.
new 9b0307a75c gnu: r-tidypredict: Update to 1.0.1.
new e2d9336092 gnu: r-parsnip: Update to 1.4.1.
new 890a798651 gnu: r-infer: Update to 1.1.0.
new 104fddebc1 gnu: r-lsa: Update to 0.73.4.
new 74ce686a99 gnu: r-qtl: Update to 1.74.
new 52a3e818cf gnu: r-seuratobject: Update to 5.3.0.
new 51b1aea0bd gnu: r-seurat: Update to 5.4.0.
new 7939def51e gnu: r-mlr3: Update to 1.3.0.
new 38d07efb27 gnu: r-mlr3learners: Update to 0.14.0.
new e04b594559 gnu: r-mlr3tuning: Update to 1.5.1.
new 389ed2ffe5 gnu: r-highlight: Update to 0.5.2.
new 582493890a gnu: r-stars: Update to 0.7-0.
new 2a4f74b5a8 gnu: r-delaporte: Update to 8.4.3.
new f572aa40bc gnu: r-vgam: Update to 1.1-14.
new 2675b676f3 gnu: r-tesseract: Update to 5.2.4.
new 88bb27dfaa gnu: r-rlang: Update to 1.1.7.
new 90429f19d3 gnu: r-tibble: Update to 3.3.1.
new d5210bc405 gnu: r-rcpparmadillo: Update to 15.2.3-1.
new e425436bff gnu: r-tidyr: Update to 1.3.2.
new 4009873b78 gnu: Add r-tidydr.
new 37b9d1eef7 gnu: r-screpertoire: Update to 2.6.2.
new d2b0a27ac3 gnu: r-txdbmaker: Update to 1.6.2.
new 21e0bd0f6a gnu: r-reactome-db: Update to 1.95.0.
new a355b080e0 gnu: r-systempiperdata: Update to 2.14.2.
new 22d964d40b gnu: r-anvil: Update to 1.22.3.
new 9329c0d4dc gnu: r-atena: Update to 1.16.1.
new b6f740f96f gnu: r-escape: Update to 2.6.2.
new fffa724b3b gnu: r-immapex: Update to 1.4.3.
new 78373459d3 gnu: r-edger: Update to 4.8.2.
new dcf80d8d0e gnu: r-enhancedvolcano: Update to 1.28.2.
new e0b7dab6e0 gnu: r-genomeinfodb: Update to 1.46.2.
new 66f68a6c91 gnu: r-genomicranges: Update to 1.62.1.
new e66218ee15 gnu: r-gsva: Update to 2.4.4.
new bfcf7ddabd gnu: r-rcy3: Update to 2.30.1.
new 2398047ab3 gnu: r-rhdf5: Update to 2.54.1.
new efe27722d5 gnu: r-rtracklayer: Update to 1.70.1.
new e97d2001ef gnu: r-sesame: Update to 1.28.1.
new fa55e6d196 gnu: r-tcgautils: Update to 1.30.2.
new 3c5638193c gnu: r-transcriptr: Update to 1.38.3.
new 725bc1fedd gnu: r-spectra: Update to 1.20.1.
new 6a6efb9d7c gnu: r-systempiper: Update to 2.16.3.
new 6a8b446d0a gnu: r-tximport: Update to 1.38.2.
new 10134e4001 gnu: r-zellkonverter: Update to 1.20.1.
new 1dc8af9bce gnu: r-graph: Update to 1.88.1.
new 47a76c5c39 gnu: r-ggtree: Update to 4.0.4.
new 454c8a9693 gnu: r-fgsea: Update to 1.36.2.
new 9694b9e642 gnu: r-enrichplot: Update to 1.30.4.
new 448dc86928 gnu: r-clusterprofiler: Update to 4.18.4.
new 7ca8b99a34 gnu: r-yapsa: Update to 1.36.1.
new e72f0cdaa6 gnu: r-wppi: Update to 1.18.0.
new 9f298503bd gnu: r-flowcore: Update to 2.22.1.
new ea8f7de008 gnu: r-ggcyto: Update to 1.38.1.
new 41e55358ff gnu: r-flowworkspace: Update to 4.22.1.
new 9953fd5c28 gnu: r-variancepartition: Update to 1.40.1.
new 6cbb6a13ce gnu: r-ucsc-utils: Update to 1.6.1.
new 1f852c3ca5 gnu: r-bioccheck: Update to 1.46.3.
new c18bab03af gnu: r-s4arrays: Update to 1.10.1.
new 4957fe8545 gnu: r-h5mread: Update to 1.2.1.
new 18f562a346 gnu: r-sparsearray: Update to 1.10.8.
new 0cf641866f gnu: r-mscoreutils: Update to 1.22.1.
new 9e64120bd3 gnu: r-bayesspace: Update to 1.20.2.
new 723d092168 gnu: r-tximeta: Update to 1.28.1.
new 4847b6e749 gnu: r-msnid: Disable one test.
new 371b7a706f gnu: r-signac: Update to 1.16.0-1.f5a8411.
new d7d5770b54 gnu: Add r-rarr.
new 8996e7cfc3 gnu: r-zarrdataframe: Update to 0.0.0-2.84c7db2.
new 8762fea566 gnu: r-qs: Skip another test.
new bb776f53b1 gnu: r-pizzarr: Update to 0.1.0-2.5f47057.
new c927e30c3b gnu: r-zarrarray: Update to 1.0-2.3cc3e6a.
new 612312526f gnu: r-rnifti: Update to 1.9.0.
new 6bc9dc960c gnu: r-rcppannoy: Update to 0.0.23.
new 900790d326 gnu: r-manipulatewidget: Update to 0.11.2.
new 2913ba1ead gnu: r-vctrs: Update to 0.7.0.
new 3a062d3c17 gnu: r-stringdist: Update to 0.9.17.
new d4c16e84cd gnu: r-extradistr: Update to 1.10.0.2.
new da5b18d10c gnu: r-stringfish: Update to 0.18.0.
new ed1ea054c5 gnu: r-netgsa: Update to 4.0.7.
new ed3a37afd9 gnu: r-blob: Update to 1.3.0.
new 24093170b8 gnu: r-fpc: Update to 2.2-14.
new 285548c244 gnu: r-prabclus: Update to 2.3-5.
new 98fbe17329 gnu: r-benchmarkmedata: Update to 2.0.0.
new e968154525 gnu: r-clock: Update to 0.7.4.
new a3dc6a00af gnu: r-ggpp: Update to 0.6.0.
new db3f89a4c9 gnu: r-snowflakeauth: Update to 0.2.1.
new 845763623f gnu: r-survival: Update to 3.8-6.
new 2e72835133 gnu: r-polylabelr: Update to 1.0.0.
new bbac5c8c2e gnu: r-grandr: Update to 0.2.7.
new d51827d7b3 gnu: r-tglkmeans: Update to 0.5.8.
new ccc10b4e73 gnu: r-secretbase: Update to 1.1.1.
new 40b3b90780 gnu: r-ggtangle: Update to 0.1.1.
new 66e445448c gnu: r-rcppspdlog: Update to 0.0.26.
new 24c4e15e74 gnu: r-rcppthread: Update to 2.3.0.
new 863822dc4d gnu: r-ctrdata: Update to 1.26.0.
new cce9b04783 gnu: r-fastmatch: Update to 1.1-8.
new 9b5cf570a1 gnu: r-xfun: Update to 0.56.
new bf7ec2a30f gnu: r-rappdirs: Update to 0.3.4.
new 64f4214e75 gnu: r-renv: Update to 1.1.6.
new 75f7ba8ff3 gnu: r-factominer: Update to 2.13.
new adac4f16e7 gnu: r-officer: Update to 0.7.3.
new ea8493699a gnu: r-dofuture: Update to 1.2.0.
new 1d24ebf126 gnu: r-ggformula: Update to 1.0.1.
new 1c744a777a gnu: r-glmmtmb: Update to 1.1.14.
new 2014761357 gnu: r-lmertest: Update to 3.2-0.
new f6ff33cd56 gnu: r-isorix: Update to 0.9.4.
new 6ecc555e11 gnu: r-future: Update to 1.69.0.
new 94afee41fc gnu: r-shinyjs: Update to 2.1.1.
new 282d312b75 gnu: r-sf: Update to 1.0-24.
new 6d456ee473 gnu: r-xml2: Update to 1.5.2.
new 0b9dd7aaba gnu: r-xgboost: Update to 3.1.3.1.
new aecf542a48 gnu: r-alabama: Update to 2025.1.0.
new 197540a439 gnu: r-actfrag: Update to 0.1.2.
new 40090bb082 gnu: r-expint: Update to 0.2-0.
new 41372bd54b gnu: r-rcdd: Update to 1.6-1.
new 4a87aea9a9 gnu: r-distributional: Update to 0.6.0.
new 5b7dbc55ca gnu: r-spatstat-univar: Update to 3.1-6.
new 4e1b351efa gnu: r-warp: Update to 0.2.3.
new 004d0fafd4 gnu: r-lwgeom: Update to 0.2-15.
new a8a80ea636 gnu: r-paws-common: Update to 0.8.8.
new a73ed64983 gnu: r-rstudioapi: Update to 0.18.0.
new 41b134a865 gnu: r-segmented: Update to 2.2-0.
new 3f9b6c9e25 gnu: r-ranger: Update to 0.18.0.
new e90b7a88b0 gnu: r-flames: Update to 2.4.2.
new 1508dd68d1 gnu: r-pcatools: Update to 2.22.1.
new 449523415a gnu: Add font-sligoil.
new f176e6a8f3 gnu: awesome: Add missing input.
new 58e6f24e42 gnu: python-internetarchive: Update to 5.7.1.
new ee17577b6e gnu: flatpak: Update to 1.16.3.
new bb898f243a gnu: Add osslsigncode.
new b5730042bf gnu: qmk: Update to 1.2.0.
new 50ebdec2de gnu: mariadb-embedded: Change the name field to match the
variable name.
new bfd13653ee gnu: python-kubernetes: Update to 35.0.0.
new 7c620d0c75 gnu: ieee-p1076: Fix paths.
new e2840c2126 gnu: Add neorv32.
new d90a8d774c gnu: Add level-zero.
new 5b6e622c72 gnu: Add umf.
new 89bd110b82 gnu: qemu-for-aflplusplus: Update to 5.2.50-1.60ebd56.
new ec46166949 gnu: aflplusplus: Update to 4.35c.
new 6403a166e6 gnu: emacs-general: Update to 0.1-0.a48768f.
new f4e6632510 gnu: emacs-evil-mc: Update to 0.0.4-0.7e363dd.
new 0eb1418d36 gnu: emacs-nerd-icons: Update to 0.1.0-2.d41902f.
new a63f4ac078 gnu: prosody-rest: New package.
new 2cfa76933e gnu: i3-wm: Update to 4.25.
new 5708b95291 gnu: akonadi: Correct input for Qt6.
new 02d6246c3d gnu: libaccounts-qt6: Correct input for Qt6.
new 14a04f0d78 gnu: libaccounts-qt6: Disinherit from libaccounts-qt.
new 8384dc2e6e gnu: plasma-desktop: Remove outdated input.
new f00df02125 gnu: xpra: Update to 6.4.1.
new 5610c76d04 gnu: ctranslate2: Update to 4.6.3.
new c118224197 gnu: Remove oneapi-dnnl.
new c1f845e6c4 gnu: libredwg: Update to 0.13.3.
new 125ba5c989 gnu: swappy: Update to 1.8.0.
new fffac211a8 gnu: r-stringfish: Fix phases.
new 3c9e04c9b3 gnu: tree-sitter-vhdl: Update to 1.3.1.
new da849a9145 gnu: gerbera: Update to 3.0.0.
new e422aad214 gnu: ttf2pt1: Fix compilation with glibc 2.41.
new d34aff1f7e gnu: ttf2pt1: Modernize.
new 92e2e4816c artwork: Update commit.
new a4d39d2cbe build: test-driver.scm: Fix test-reporting with guile
3.0.11.
new 817ff57604 gnu: jaro: Set paths.
new ef24686b20 gnu: unity-test: Add option for supporting 64bit integers.
new 9af25edaaf gnu: clojure: Update to 1.12.4.
new 441819989d gnu: clojure-tools: Update to 1.12.4.1582.
new 86074438e1 gnu: clojure-tools-deps: Update to 0.28.1569.
new 8e75c6c1f1 gnu: clojure-tools-deps: Default to local clojure jar.
new 279616da6d gnu: clojure-tools: Add missing SLF4J logger implementation.
new 3701dc9bea gnu: Add cognitect-aws-api.
new 9ce0a1fe0b gnu: Add clojure-java-classpath.
new 63e9052aaf gnu: Add clojure-spec-alpha.
new eb61e0ce4a gnu: Add clojure-core-specs-alpha.
new d1a82fdf81 gnu: Add clojure-data-generators.
new 6872ff5cf0 gnu: Add clojure-tools-namespace.
new 0baede4918 gnu: Add clojure-test-generative.
new d41ad7d148 gnu: clojure: Reference existing packages.
new da3d6a5f3f gnu: clojure-core-cache: Update to 1.2.249.
new 1af65e7ff6 gnu: clojure-algo-generic: Update to 1.0.1.
new 482ef8e183 gnu: clojure-data-json: Update to 2.5.2.
new 55a9281ad0 gnu: http-kit: Update to 2.8.1.
new 8b69e1f800 gnu: clojure-tools-logging: Update to 1.3.1.
new 6c004555a8 gnu: clojure-tools-gitlibs: Update to 2.6.212.
new 41a3697370 gnu: clojure-test-check: Update to 1.1.3.
new c6ad769066 gnu: clojure-tools-reader: Update to 1.6.0.
new 0e8ce5b843 gnu: clojure-algo-monads: Update to 0.2.1.
new 51d6836386 gnu: clojure-core-async: Update to 1.8.741.
new 4d92faf72d gnu: clojure-core-match: Update to 1.1.1.
new b9a7ae6380 gnu: clojure-core-memoize: Update to 1.2.273.
new ce091b777d gnu: clojure-data-codec: Update to 0.2.1.
new d6f3d16b2c gnu: clojure-data-csv: Update to 1.1.1.
new f456d552fe gnu: clojure-data-priority-map: Update to 1.2.1.
new b2558646b9 gnu: clojure-data-xml: Update to 0.2.0-alpha10.
new 86919a3b43 gnu: clojure-tools-analyzer: Update to 1.2.1.
new 0e6b1117eb gnu: clojure-tools-analyzer-jvm: Update to 1.3.4.
new e3de09d839 gnu: clojure-tools-macro: Update to 0.2.2.
new 7968a75031 gnu: clojure-tools-cli: Update to 1.3.250.
new bea1874d98 gnu: clojure-tools-deps-alpha: Update to 0.15.1254.
new d25166c06d gnu: libgit2: Fix tests on 32bit systems.
new b44103c0d3 gnu: endless-sky: Update to 0.10.16.
new 8d167feaaf gnu: Add spdlog-1.14.
new 3ffa19fabb gnu: level-zero: Fix inputs and licenses.
new 5770aad73f gnu: hyprlang: Update to 0.6.8.
new 9b000588b4 gnu: hyprtoolkit: Update to 0.5.3.
new 2e11c3e1b5 gnu: Add glaze.
new e72ccef566 gnu: hyprland: Update to 0.53.3.
new b57b68aba6 gnu: open-logic: Move to hdl
new f3d2705f64 gnu: ieee-p1076: Move to hdl.
new 8bb9658d7b gnu: open-logic: Update to 4.3.0.
new ad9d4f1793 gnu: opencascade-occt-7.6.1: Do not inherit.
new 891f268fe8 gnu: opencascade-occt: Update to 7.9.3.
new d772038084 gnu: freecad: Update dependency on tbb.
new b989e0138e gnu: koboldcpp: Update to 1.106.2.
The 997 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
CODEOWNERS | 1 +
build-aux/test-driver.scm | 4 +-
doc/guix.texi | 73 +-
etc/teams.scm | 3 +-
gnu/artwork.scm | 4 +-
gnu/bootloader.scm | 11 +-
gnu/local.mk | 27 +-
gnu/packages/admin.scm | 144 +-
gnu/packages/aidc.scm | 45 +-
gnu/packages/algebra.scm | 2 +-
gnu/packages/android.scm | 29 +-
gnu/packages/astronomy.scm | 780 +++---
gnu/packages/audio.scm | 129 +-
gnu/packages/backup.scm | 2 +-
gnu/packages/bioconductor.scm | 282 +-
gnu/packages/bioinformatics.scm | 1613 ++++++-----
gnu/packages/bison.scm | 13 -
gnu/packages/books.scm | 3 +-
gnu/packages/boost.scm | 2 +-
gnu/packages/build-tools.scm | 139 +-
gnu/packages/c.scm | 54 +
gnu/packages/check.scm | 79 +-
gnu/packages/chemistry.scm | 309 ++-
gnu/packages/ci.scm | 4 +-
gnu/packages/cinnamon.scm | 64 +-
gnu/packages/clojure.scm | 595 ++--
gnu/packages/compression.scm | 4 +-
gnu/packages/cook.scm | 91 -
gnu/packages/cpp.scm | 42 +-
gnu/packages/cran.scm | 1289 +++++----
gnu/packages/crypto.scm | 29 +
gnu/packages/cups.scm | 190 +-
gnu/packages/cybersecurity.scm | 2 +-
gnu/packages/databases.scm | 187 +-
gnu/packages/debug.scm | 10 +-
gnu/packages/disk.scm | 4 +-
gnu/packages/django.scm | 29 +-
gnu/packages/djvu.scm | 47 +-
gnu/packages/documentation.scm | 1 -
gnu/packages/duckdb.scm | 6 +-
gnu/packages/ebook.scm | 50 +-
gnu/packages/electronics.scm | 295 +-
gnu/packages/emacs-xyz.scm | 187 +-
gnu/packages/emulators.scm | 2 +-
gnu/packages/engineering.scm | 225 +-
gnu/packages/finance.scm | 197 +-
gnu/packages/firmware.scm | 4 +-
gnu/packages/fonts.scm | 32 +-
gnu/packages/fontutils.scm | 58 +-
gnu/packages/freedesktop.scm | 35 +-
gnu/packages/fusion.scm | 96 +
gnu/packages/game-development.scm | 176 +-
gnu/packages/games.scm | 29 +-
gnu/packages/geo.scm | 59 +-
gnu/packages/gettext.scm | 41 +-
gnu/packages/gl.scm | 2 +-
gnu/packages/gnome-xyz.scm | 42 +-
gnu/packages/gnome.scm | 111 +-
gnu/packages/gnupg.scm | 57 +-
gnu/packages/golang-vcs.scm | 49 +
gnu/packages/golang-xyz.scm | 566 ++--
gnu/packages/gps.scm | 9 +-
gnu/packages/graph.scm | 117 +-
gnu/packages/graphics.scm | 2 +-
gnu/packages/guile-xyz.scm | 18 +
gnu/packages/guile.scm | 52 +-
gnu/packages/hardware.scm | 13 +-
gnu/packages/hdl.scm | 193 ++
gnu/packages/hurd.scm | 4 +-
gnu/packages/image-processing.scm | 2 +-
gnu/packages/image-viewers.scm | 7 +-
gnu/packages/image.scm | 51 +-
gnu/packages/instrumentation.scm | 4 +-
gnu/packages/jami.scm | 2 +-
gnu/packages/java-xml.scm | 268 ++
gnu/packages/java.scm | 82 +
gnu/packages/jupyter.scm | 350 ++-
gnu/packages/kde-education.scm | 7 +-
gnu/packages/kde-frameworks.scm | 11 +-
gnu/packages/kde-graphics.scm | 6 +-
gnu/packages/kde-internet.scm | 14 +-
gnu/packages/kde-pim.scm | 16 +-
gnu/packages/kde-plasma.scm | 3 +-
gnu/packages/kde-utils.scm | 4 +-
gnu/packages/libffi.scm | 22 +-
gnu/packages/libunistring.scm | 13 +-
gnu/packages/llvm.scm | 435 ++-
gnu/packages/logging.scm | 18 +
gnu/packages/machine-learning.scm | 698 +++--
gnu/packages/mail.scm | 42 +-
gnu/packages/maths.scm | 770 +++---
gnu/packages/maven-parent-pom.scm | 10 +
gnu/packages/messaging.scm | 73 +-
gnu/packages/mold.scm | 8 +-
gnu/packages/monitoring.scm | 37 +-
gnu/packages/music.scm | 101 +-
gnu/packages/nettle.scm | 61 +-
gnu/packages/networking.scm | 4 +-
gnu/packages/oneapi.scm | 100 +
gnu/packages/opencl.scm | 164 +-
gnu/packages/package-management.scm | 12 +-
gnu/packages/parallel.scm | 10 +-
gnu/packages/password-utils.scm | 41 +-
gnu/packages/patches/aegis-constness-error.patch | 12 -
gnu/packages/patches/aegis-perl-tempdir1.patch | 14 -
gnu/packages/patches/aegis-perl-tempdir2.patch | 18 -
gnu/packages/patches/aegis-test-fixup-1.patch | 15 -
gnu/packages/patches/aegis-test-fixup-2.patch | 24 -
.../patches/bmake-run-check-separately.patch | 26 +
gnu/packages/patches/gnumach-kmsg-overflow.patch | 59 +
.../patches/guile-3.0.11-cross-compilation.patch | 29 +
gnu/packages/patches/hurd-streamio-select.patch | 88 +
gnu/packages/patches/nextpnr-gtest.patch | 30 -
.../patches/python-daemon-relax-lockfile.patch | 249 ++
...ython-matplotlib-fix-legend-loc-best-test.patch | 84 -
.../patches/python-pyreadstat-link-libiconv.patch | 7 +-
gnu/packages/patches/python-scipy-i686.patch | 49 -
...ython-xmp-toolkit-add-missing-error-codes.patch | 51 -
.../patches/rocclr-5.6.0-enable-gfx800.patch | 4 +-
...ndwidth-test-fix-external-packages-search.patch | 58 +
...andwidth-test-fix-hsa-include-file-lookup.patch | 16 +
...h-test-take-default-gpus-from-environment.patch | 29 +
.../patches/rocm-opencl-runtime-4.3-noclinfo.patch | 8 +-
.../patches/unity-test-support-int64.patch | 47 +
...tall_libs.patch => xpra-6.4-install_libs.patch} | 26 +-
...ystemd-run.patch => xpra-6.4-systemd-run.patch} | 11 +-
gnu/packages/php.scm | 4 +-
gnu/packages/protobuf.scm | 2 +-
gnu/packages/pypy.scm | 84 +-
gnu/packages/python-build.scm | 26 +-
gnu/packages/python-check.scm | 217 +-
gnu/packages/python-compression.scm | 43 +-
gnu/packages/python-graphics.scm | 35 +-
gnu/packages/python-science.scm | 2539 +++++++++--------
gnu/packages/python-web.scm | 181 +-
gnu/packages/python-xyz.scm | 2524 +++++++++--------
gnu/packages/qt.scm | 46 +-
gnu/packages/radio.scm | 29 +-
gnu/packages/rocm.scm | 484 ++--
gnu/packages/rpm.scm | 34 +-
gnu/packages/ruby-xyz.scm | 2 +-
gnu/packages/rust-crates.scm | 2839 ++++++++++++--------
gnu/packages/sagemath.scm | 11 +
gnu/packages/search.scm | 55 -
gnu/packages/security-token.scm | 62 +-
gnu/packages/simulation.scm | 37 +-
gnu/packages/sphinx.scm | 64 +-
gnu/packages/ssh.scm | 31 +-
gnu/packages/statistics.scm | 425 +--
gnu/packages/suckless.scm | 29 +-
gnu/packages/sugar.scm | 189 +-
gnu/packages/terminals.scm | 26 +-
gnu/packages/tex.scm | 4 +-
gnu/packages/texlive.scm | 403 +--
gnu/packages/time.scm | 24 +-
gnu/packages/tls.scm | 4 +-
gnu/packages/toolkits.scm | 3 +-
gnu/packages/tree-sitter.scm | 12 +
gnu/packages/upnp.scm | 21 +-
gnu/packages/version-control.scm | 411 ++-
gnu/packages/video.scm | 47 +-
gnu/packages/web-browsers.scm | 131 -
gnu/packages/web.scm | 58 +-
gnu/packages/wget.scm | 4 +-
gnu/packages/wm.scm | 155 +-
gnu/packages/xdisorg.scm | 54 +-
gnu/packages/xorg.scm | 46 +-
gnu/system/hurd.scm | 4 +-
gnu/system/image.scm | 23 +-
gnu/tests/audio.scm | 1 +
guix/build-system/python.scm | 5 +-
guix/build/texlive-build-system.scm | 17 +-
guix/describe.scm | 22 +
guix/git-authenticate.scm | 25 +-
guix/import/utils.scm | 9 +-
guix/inferior.scm | 2 +-
guix/licenses.scm | 7 +-
guix/platform.scm | 7 +-
guix/transformations.scm | 105 +-
guix/upstream.scm | 9 +-
po/packages/POTFILES.in | 2 +-
tests/file-systems.scm | 2 +
tests/services/file-sharing.scm | 3 +
tests/store.scm | 6 +-
tests/style.scm | 12 +-
tests/toml.scm | 16 +-
tests/transformations.scm | 41 +-
187 files changed, 14496 insertions(+), 10680 deletions(-)
delete mode 100644 gnu/packages/cook.scm
create mode 100644 gnu/packages/fusion.scm
create mode 100644 gnu/packages/hdl.scm
delete mode 100644 gnu/packages/patches/aegis-constness-error.patch
delete mode 100644 gnu/packages/patches/aegis-perl-tempdir1.patch
delete mode 100644 gnu/packages/patches/aegis-perl-tempdir2.patch
delete mode 100644 gnu/packages/patches/aegis-test-fixup-1.patch
delete mode 100644 gnu/packages/patches/aegis-test-fixup-2.patch
create mode 100644 gnu/packages/patches/bmake-run-check-separately.patch
create mode 100644 gnu/packages/patches/gnumach-kmsg-overflow.patch
create mode 100644 gnu/packages/patches/guile-3.0.11-cross-compilation.patch
create mode 100644 gnu/packages/patches/hurd-streamio-select.patch
delete mode 100644 gnu/packages/patches/nextpnr-gtest.patch
create mode 100644 gnu/packages/patches/python-daemon-relax-lockfile.patch
delete mode 100644
gnu/packages/patches/python-matplotlib-fix-legend-loc-best-test.patch
delete mode 100644 gnu/packages/patches/python-scipy-i686.patch
delete mode 100644
gnu/packages/patches/python-xmp-toolkit-add-missing-error-codes.patch
create mode 100644
gnu/packages/patches/rocm-bandwidth-test-fix-external-packages-search.patch
create mode 100644
gnu/packages/patches/rocm-bandwidth-test-fix-hsa-include-file-lookup.patch
create mode 100644
gnu/packages/patches/rocm-bandwidth-test-take-default-gpus-from-environment.patch
create mode 100644 gnu/packages/patches/unity-test-support-int64.patch
rename gnu/packages/patches/{xpra-6.1-install_libs.patch =>
xpra-6.4-install_libs.patch} (70%)
rename gnu/packages/patches/{xpra-6.0-systemd-run.patch =>
xpra-6.4-systemd-run.patch} (86%)
