guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 0f17bb44a35740186a58300b8a11202957b6596b
Author: Andreas Enge <[email protected]>
AuthorDate: Sat Feb 7 14:19:36 2026 +0100
gnu: Remove python-biofluff.
* gnu/packages/bioinformatics.scm (python-biofluff): Delete variable.
Fixes: guix/guix#5249
Change-Id: I01a3672be5d344aba4e14f280350d27b910c9e61
---
gnu/packages/bioinformatics.scm | 48 -----------------------------------------
1 file changed, 48 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d231601920..9a9bf063fe 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2305,54 +2305,6 @@ version = ~s
efficiently.")
(license license:asl2.0)))
-;; Note: the name on PyPi is "biofluff".
-(define-public python-biofluff
- (package
- (name "python-biofluff")
- (version "3.0.4")
- ;; PyPi tarball does not contain test data.
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/simonvh/fluff";)
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "12yvhgp72s2ygf3h07rrc852zd6q8swc41hm28mcczpsyprggxyz"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- ;; Theses tests require internet access
- '(list "--ignore=tests/test_mirror.py"
- "-k" "not test_plots_big")
- #:phases
- '(modify-phases %standard-phases
- (add-after 'unpack 'matplotlib-compatibility
- (lambda _
- (substitute* "fluff/plot.py"
- (("beginarrow=False, endarrow=True,") "")))))))
- (propagated-inputs
- (list htseq
- python-matplotlib
- python-numpy
- python-palettable
- python-pybedtools
- python-pybigwig
- python-pysam
- python-scikit-learn
- python-scipy))
- (native-inputs
- (list python-pytest python-setuptools python-wheel))
- (home-page "https://github.com/simonvh/fluff/";)
- (synopsis "Analysis and visualization of high-throughput sequencing data")
- (description
- "Fluff is a Python package that contains several scripts to produce
-pretty, publication-quality figures for next-generation sequencing
-experiments.")
- (license license:expat)))
-
(define-public python-bulkvis
(let ((commit "00a82a90c7e748a34af896e779d27e78a2c82b5e")
(revision "2"))
