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new 3a06a2061f build-system/r: Use %BIOCONDUCTOR-VERSION.
3a06a2061f is described below
commit 3a06a2061f6c3f6c9a7f528dcd96f99c1fb57588
Author: Kyle Andrews <[email protected]>
AuthorDate: Wed Jul 24 23:13:46 2019 -0400
build-system/r: Use %BIOCONDUCTOR-VERSION.
* guix/build-system/r.scm (bioconductor-uri): Accept optional RELEASE
argument, defaulting to %BIOCONDUCTOR-VERSION from (guix import cran).
Change-Id: I5949cd5c01120a2cdeccb522c2d7b2ebb64cb362
---
guix/build-system/r.scm | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/guix/build-system/r.scm b/guix/build-system/r.scm
index a851b03175..f5d18137b9 100644
--- a/guix/build-system/r.scm
+++ b/guix/build-system/r.scm
@@ -26,6 +26,7 @@
#:use-module (guix search-paths)
#:use-module (guix build-system)
#:use-module (guix build-system gnu)
+ #:use-module ((guix import cran) #:select (%bioconductor-version))
#:use-module (ice-9 match)
#:export (%r-build-system-modules
r-build
@@ -48,7 +49,8 @@ available via the first URI, the second URI points to the
archived version."
(string-append "mirror://cran/src/contrib/Archive/"
name "/" name "_" version ".tar.gz")))
-(define* (bioconductor-uri name version #:optional type)
+(define* (bioconductor-uri name version #:optional type
+ (release %bioconductor-version))
"Return a URI string for the R package archive on Bioconductor for the
release corresponding to NAME and VERSION."
(let ((type-url-part (match type
@@ -59,8 +61,7 @@ release corresponding to NAME and VERSION."
type-url-part
"/src/contrib/"
name "_" version ".tar.gz")
- ;; TODO: use %bioconductor-version from (guix import cran)
- (string-append "https://bioconductor.org/packages/3.22";
+ (string-append "https://bioconductor.org/packages/"; release
type-url-part
"/src/contrib/"
name "_" version ".tar.gz"))))
