guix_mirror_bot pushed a commit to branch astro-update
in repository guix.
commit 5bdcd667787b24ecf98ef83d48ed2fd7ae6ea817
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Fri Feb 13 16:25:11 2026 +0000
gnu: python-kanon: Update to 0.6.6-0.16aca8d.
* gnu/packages/astronomy.scm (python-kanon): Update to
16aca8d7027937044b0b34942968cb2fee630cad commit.
[source]: Use the latest commit.
[arguments] <test-flags>: Rework skipped tests.
<phases>: Keep 'sanity-check; add 'fix-astropy-7-compatibility, and
'set-version, and move version setting logic from 'relax-requirements
phase her.
[propagated-inputs]: Remove python-astropy-6 and python-numpy-1; add
python-astropy and python-numpy.
[native-inputs]: Remove python-pytest-xdist; add nss-certs-for-test and
python-pytest.
Change-Id: Ie5c38fcd26e17afc0dec92be40043d303f48d632
---
gnu/packages/astronomy.scm | 83 +++++++++++++++++++++++++++++++++-------------
1 file changed, 60 insertions(+), 23 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 467a058541..842b0cd438 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6286,60 +6286,97 @@ files.")
(define-public python-kanon
(package
(name "python-kanon")
- (version "0.6.6")
+ ;; 0.6.6 was released in 2022 which does not support Astropy 7+ and
+ ;; NumPy2, try to use the latest commit providing some compatibilities,
+ ;; see: <https://github.com/ALFA-project-erc/kanon/issues/149>,
+ ;; <https://github.com/ALFA-project-erc/kanon/issues/156>.
+ (properties '((commit . "16aca8d7027937044b0b34942968cb2fee630cad")
+ (revision . "0")))
+ (version (git-version "0.6.6"
+ (assoc-ref properties 'revision)
+ (assoc-ref properties 'commit)))
(source
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/ALFA-project-erc/kanon";)
- (commit (string-append "v" version))))
+ (url "https://github.com/ALFA-project-erc/kanon";)
+ (commit (assoc-ref properties 'commit))))
(file-name (git-file-name name version))
(sha256
- (base32 "0sg9yrsas5xmhbw6mhfyxsxh9i060af6v02whr9fqgv687fiyrhc"))))
+ (base32 "0d6dvlllpga0d6l5bm3hmwsx4z5qay0dd0h7xn209kgn0369rryc"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; tests: 150 passed, 18 deselected, 246 warnings
+ ;; tests: 151 passed, 11 deselected, 220 warnings
#:test-flags
- ;; XXX: This tests failing a lot.
- #~(list "-k" (string-append "not test_attribute_forwardin"
- " and not test_declination"
- " and not test_init_basedquantity"
- " and not test_ptolemy_viz"
- " and not test_ptolemy_viz"
- " and not test_quantity"
- " and not test_read"
- " and not test_shifting"
- " and not test_sun_true_position"
- " and not test_sun_true_position")
- "--ignore=kanon/tables/__init__.py")
+ #~(list "--ignore=examples/"
+ "--ignore=kanon/tables/__init__.py"
+ "--ignore=kanon/tables/htable.py"
+ #$@(map (lambda (test) (string-append "--deselect=kanon/"
+ test))
+ ;; XXX: Errors in tests is indication of NumPy2 issues,
+ ;; upstream is not responsive, try to fix them in the
+ ;; package.
+ (list
+ ;; ValueError: Unable to avoid copy while creating an
+ ;; array as requested.
+ "tables/tests/test_hcolumn.py::TestHColumn::test_init"
+ "tables/tests/test_hcolumn.py::TestHColumn::test_astype"
+
"tables/tests/test_hcolumn.py::TestHColumn::test_truncable"
+ ;; ValueError: First and last rows must not be masked
+ "tables/tests/test_htable.py::test_fill"
+ ;; Network access is required
+
"tables/tests/test_htable_reader.py::test_get_number_of_cells"
+ ;; ValueError: The truth value of an array with more
+ ;; than one element is ambiguous. Use a.any() or
+ ;; a.all()
+ "tests/test_based_htable.py::test_read"
+ ;; assert False
+ "tests/test_based_htable.py::test_quantity"
+ ;; AttributeError: 'int' object has no attribute
+ ;; 'truncate'
+
"units/tests/test_quantity.py::TestQuantity::test_attribute_forwarding"
+ ;; AttributeError: 'numpy.ndarray' object has no
+ ;; attribute 'equals'
+
"units/tests/test_quantity.py::TestQuantity::test_shifting"
+
"units/tests/test_quantity.py::TestQuantity::test_init_basedquantity")))
#:phases
#~(modify-phases %standard-phases
- ;; See <https://github.com/ALFA-project-erc/kanon/issues/149>.
- (delete 'sanity-check)
+ (add-after 'unpack 'fix-astropy-7-compatibility
+ (lambda _
+ (substitute* "kanon/units/radices.py"
+ (("from astropy\\.units.core import Unit, .*")
+ (string-append
+ "from astropy.units.core import Unit, UnitBase\n"
+ "from astropy.units.errors import UnitTypeError\n")))))
(add-after 'unpack 'relax-requirements
(lambda _
(substitute* "pyproject.toml"
- (("version = \"0.0.0\"") (string-append "version = \""
#$version "\""))
;; RuntimeError: Unable to detect version control
;; system. Checked: Git. Not installed: Mercurial, Darcs,
;; Subversion, Bazaar, Fossil, Pijul. See
;; <https://github.com/blacklanternsecurity/bbot/issues/1257>.
(("enable = true") "enable = false"))))
+ (add-before 'build 'set-version
+ (lambda _
+ ;; TODO: Include in pyproject-build-system.
+ (setenv "POETRY_DYNAMIC_VERSIONING_BYPASS"
+ #$(version-major+minor+point version))))
(add-before 'check 'prepare-test-environment
(lambda _
(setenv "HOME" "/tmp"))))))
(native-inputs
(list git-minimal/pinned
+ nss-certs-for-test
python-poetry-core
python-poetry-dynamic-versioning
+ python-pytest
python-pytest-astropy
- python-pytest-xdist
python-requests-mock))
(propagated-inputs
- (list python-astropy-6
+ (list python-astropy
python-matplotlib
- python-numpy-1
+ python-numpy
python-pandas
python-requests
python-scipy
