guix_mirror_bot pushed a change to branch kernel-updates
in repository guix.
from f08a98477a Merge remote-tracking branch 'origin/master' into
kernel-updates-20260211-6348
new 582f9c545a gnu: linux-libre 6.12: Update to 6.12.71.
add 3a2c82c09a build-aux: Turn `with-input-pipe-to-string' into a
procedure.
add 427b8f960e Makefile.am: Update hooks even when working from a git
worktree.
add 46793f96cd Makefile.am: Add git-config and git-hooks convenience
targets.
add fc62ea7409 gnu: conda: Make ~/.conda be tried LAST.
add 6b682e5e55 gnu: python-tornado-6: Use 'define-deprecated-package`.
add b9dd5b8953 gnu: python-ipykernel-6: Fix build.
add 03c73b3995 gnu: vtk: Update to 9.4.2 and add vtk-9.3.
add 660d6437f8 gnu: love: No more devil.
add 0e93e3a29b gnu: qlogo: Update to 0.961 and switch to Qt6.
add 29a6ae6543 gnu: uim-gtk: Remove obsolete input.
add f2d52e1853 gnu: gp2c: Update to 0.0.14pl1.
add 0ae891a57d gnu: python-vedo: Update to 2025.5.4.
add 847dc67adf gnu: nginx-lua-module: Update to 0.10.29.
add 5dd37b30b4 gnu: python-numpy-documentation: Fix build.
add 2e099c8907 gnu: clojure-tools: Wrap clojure executable.
add 83d89b0645 gnu: vtk: Update to 9.5.2 and add vtk-9.4.
add 240b3be58a gnu: openttd-engine: Update to 15.1.
add 342c82027b gnu: openttd-jgrpp: Update to 0.70.0.
add 13fad785b9 gnu: luanti-mineclonia: Update to 0.119.0.
add fe4f4dcfe1 gnu: trealla: Update to 2.90.21.
add 44bd21a75c gnu: qutebrowser: Update to 3.6.3.
add 0add7609d3 home: services: pipewire: Install pipewire and wireplumber.
add 6b3b3f7945 gnu: srain: Update to 1.8.1.
add 0e90d79d00 gnu: cage: Update to 0.2.1.
add ade30e87ce gnu: maim: Update to 5.8.1
add 83ded232d4 gnu: solaar: Update to 1.1.19.
add 319d5643aa gnu: aide: Update to 0.19.3.
add d780d3e11b gnu: watchdogd: Update to 4.1.
add 89fd9cd359 gnu: vtk: Update to 9.6.0 and add vtk-9.5.
add d664fadd7e gnu: r-randomforestsrc: Update to 3.5.0.
add eec58c78fd gnu: r-bedr: Update to 1.1.5.
add 080d0232d9 gnu: apache-arrow: Update to 23.0.0.
add fa6f629d22 gnu: r-arrow: Update to 23.0.0.
add 44e80842c7 gnu: r-ggiraph: Update to 0.9.3.
add 4e11c66b1e gnu: r-misctools: Update to 0.6-30.
add 853b258522 gnu: r-tfmpvalue: Update to 1.0.0.
add 6dd4497f63 gnu: Add js-mathjax-4.
add 2241946157 gnu: r-mathjaxr: Update to 2.0-0.
add 07257b4d18 gnu: r-bbmisc: Update to 1.13.1.
add 2d9edcfb13 gnu: r-castor: Update to 1.8.5.
add 0068b61e3c gnu: r-collections: Update to 0.3.10.
add 9d86a653dc gnu: r-plotly: Update to 4.12.0.
add 8cdae95416 gnu: r-zcompositions: Update to 1.6.0.
add 8ab524f794 gnu: r-minty: Update to 0.0.6.
add 7ad188bfd2 gnu: r-ptw: Update to 1.9-17.
add 684d4b5f77 gnu: r-fitdistrplus: Update to 1.2-6.
add 97b9595576 gnu: r-kit: Update to 0.0.21.
add f0c56aa0ad gnu: r-linprog: Update to 0.9-6.
add 0e1b6db5b7 gnu: r-vctrs: Update to 0.7.1.
add 0547b4ea5d gnu: r-uuid: Update to 1.2-2.
add e47400d0cb gnu: r-ncdfcf: Update to 0.8.0.
add 361e558211 gnu: r-adbcdrivermanager: Update to 0.22.0.
add 0c6b1f1b21 gnu: r-rbibutils: Update to 2.4.1.
add 44950f8061 gnu: r-rdpack: Update to 2.6.5.
add 432f9793d5 gnu: r-insight: Update to 1.4.5.
add a077f6e14b gnu: r-hash: Update to 2.2.6.4.
add 63eb990d8d gnu: r-blavaan: Update to 0.5-10.
add d1ded4b169 gnu: r-quickjsr: Update to 1.9.0.
add b78f978416 gnu: r-rnaturalearth: Update to 1.2.0.
add 26ff46a294 gnu: r-rncl: Update to 0.8.9.
add 1d57912533 gnu: r-kohonen: Update to 3.0.13.
add b4671dac23 gnu: r-rjava: Update to 1.0-14.
add 2687aca005 gnu: r-gbm: Update to 2.2.3.
add 94b08e55da gnu: r-scrime: Update to 1.3.7.
add 782cc9887a gnu: r-kmer: Update to 1.1.3.
add 72dd525be8 gnu: r-spatstat-explore: Update to 3.7-0.
add d8dc5e606d gnu: r-spatstat-geom: Update to 3.7-0.
add 40e3d758d5 gnu: r-spatstat-random: Update to 3.4-4.
add 403d3b96a4 gnu: r-cpp11: Update to 0.5.3.
add d95fd4328b gnu: r-textplot: Update to 0.2.3.
add a0984b9160 gnu: r-qs2: Update to 0.1.7.
add 447fd9e539 gnu: r-rocr: Update to 1.0-12.
add 406d37a277 gnu: r-sn: Update to 2.1.2.
add c4bd0eed04 gnu: r-tesseract: Update to 5.2.5.
add ae5fb3234a gnu: Add r-ggamma.
add c2e086413e gnu: r-bslib: Update to 0.10.0.
add 7af33599b6 gnu: r-expint: Update to 0.2-1.
add 22dc2e2656 gnu: r-vroom: Update to 1.7.0.
add be3f4721d9 gnu: r-readr: Disable one test.
add 132eb8b569 gnu: r-data-table: Update to 1.18.2.1.
add 4a24daa667 gnu: r-orgmassspecr: Update to 0.5-4.
add 7770c92c6e gnu: r-plumber: Update to 1.3.3.
add f192c6fe2e gnu: r-mnormt: Update to 2.1.2.
add 26950d9e07 gnu: r-broom: Update to 1.0.12.
add 4965896763 gnu: r-renv: Update to 1.1.7.
add 88a0e032d6 gnu: r-summarytools: Update to 1.1.5.
add 83c321dd2d gnu: r-misc3d: Update to 0.9-2.
add 50c276b8b7 gnu: r-sparsevctrs: Update to 0.3.6.
add ca9131a956 gnu: r-flexdashboard: Update to 0.6.3.
add 4c045a890a gnu: r-semver: Update to 0.2.1.
add 24d7af4799 gnu: r-duckdb: Update to 1.4.4.
add 4f1331939f gnu: r-saige: Update to 1.5.1-1.7172b7f.
add 88a537a0b4 gnu: r-checkmate: Update to 2.3.4.
add 38755b5990 gnu: r-car: Update to 3.1-5.
add 6dd51a46bf gnu: r-numbat: Update to 1.5.2.
add d5cae29268 gnu: r-scistreer: Update to 1.2.1.
add adee6ce457 gnu: r-wgcna: Update to 1.74.
add bb9e4671f6 gnu: r-aer: Update to 1.2-16.
add d644020db2 gnu: r-base64enc: Update to 0.1-6.
add c218626a9c gnu: r-cardata: Update to 3.0-6.
add e01dc325bf gnu: r-cardx: Update to 0.3.2.
add 1c50db339c gnu: r-clubsandwich: Update to 0.6.2.
add b8caeb3869 gnu: r-collections: Update to 0.3.11.
add c506321437 gnu: r-dplyr: Update to 1.2.0.
add 05b0023ba6 gnu: r-gdtools: Update to 0.5.0.
add 8e51dac5ba gnu: r-ggiraph: Update to 0.9.4.
add 4db021aef3 gnu: r-ggplot2: Update to 4.0.2.
add 673636d8d6 gnu: r-ggstatsplot: Update to 0.13.5.
add 9ec17fd51a gnu: r-irlba: Update to 2.3.7.
add bc8c80b7c7 gnu: r-permute: Update to 0.9-10.
add 92ac6f1404 gnu: r-runner: Update to 0.4.6.
add 86e9ef61a9 gnu: r-rtk: Update to 0.2.7.
add 6c642eff9c gnu: r-cluster: Update to 2.1.8.2.
add 5d17561ab6 gnu: r-foreign: Update to 0.8-91.
add b73317e155 gnu: r-fpeek: Update to 0.2.0.
add e06b052e59 gnu: r-lattice: Update to 0.22-9.
add eebbc18b19 gnu: r-lubridate: Update to 1.9.5.
add 95d4d9a559 gnu: r-gap: Update to 1.9.
add c82ef93d0f gnu: r-secretbase: Update to 1.2.0.
add 90c14eca48 gnu: r-partykit: Update to 1.2-25.
add f4bbf7bd0c gnu: r-pkgload: Update to 1.5.0.
add df398634ae gnu: r-bindrcpp: Update to 0.2.4.
add e83a551d33 gnu: r-rmariadb: Update to 1.3.5.
add f291d52561 gnu: r-littler: Update to 0.3.22.
add 386d9dba1c gnu: r-timechange: Update to 0.4.0.
add 3a631b1fda gnu: r-timedate: Update to 4052.112.
add 25687d00ce gnu: r-rpostgres: Update to 1.4.9.
add 15c40bf093 gnu: r-psych: Update to 2.6.1.
add 01971397f1 gnu: r-statsexpressions: Update to 1.7.3.
add 0e7eb97a2d gnu: r-nanonext: Update to 1.8.0.
add 58e649d7bd gnu: r-ncdfcf: Update to 0.8.1.
add 7605e516ef gnu: r-network: Update to 1.20.0.
add c30345fe06 gnu: r-stabs: Update to 0.7-1.
add 0e5674d268 gnu: r-np: Update to 0.60-19.
add 1a66846dc9 gnu: r-randomizr: Update to 1.0.1.
add f4b0a082d2 gnu: r-sqldf: Update to 0.4-12.
add bb2031b1f9 gnu: r-operator-tools: Update to 1.6.3.1.
add 059647218d gnu: r-bibtex: Update to 0.5.2.
add a12e13bdec gnu: r-billboarder: Update to 0.5.1.
add 7415ae7edd gnu: r-rdpack: Update to 2.6.6.
add 3e9edde26c gnu: r-profilemodel: Update to 0.6.2.
add ae1a08c830 gnu: r-insight: Update to 1.4.6.
add 1894e83c90 gnu: r-reformulas: Update to 0.4.4.
add 7ed718a6ab gnu: r-performance: Update to 0.16.0.
add e00d68dc48 gnu: r-tweedie: Update to 3.0.12.
add 897044a54d gnu: r-rcppalgos: Update to 2.9.5.
add 5b2d49d3d5 gnu: r-rgl: Update to 1.3.34.
add ee681581b4 gnu: r-gargle: Update to 1.6.1.
add 407707a30b gnu: r-gmp: Update to 0.7-5.1.
add c194763106 gnu: r-globals: Update to 0.19.0.
add a18acf5142 gnu: r-dorng: Update to 1.8.6.3.
add 5f8eba6633 gnu: r-irace: Update to 4.4.0.
add 3b6a186a5b gnu: r-learnbayes: Update to 2.15.2.
add 8e7c599d23 gnu: r-yulab-utils: Update to 0.2.4.
add 942af03a14 gnu: r-varselrf: Update to 0.7-9.
add 4378e2eeee gnu: r-arrow: Update to 23.0.0.1.
add 5533ccdfe1 gnu: r-desolve: Update to 1.41.
add db083e46ac gnu: r-acuityview: Update to 1.1.1.
add 98465aeb67 gnu: r-spatstat-model: Update to 3.6-1.
add 0518dac05a gnu: r-spatstat-linnet: Update to 3.4-1.
add b68398bc42 gnu: r-spatstat: Update to 3.5-1.
add 3de0984e1e gnu: r-nanoarrow: Update to 0.7.0-3.
add c6799e0a80 gnu: r-rsample: Update to 1.3.2.
add 08bd3edcd6 gnu: r-lgr: Update to 0.5.2.
add b9c51fd747 gnu: r-mlr3cluster: Update to 0.2.0.
add e7d9794d51 gnu: r-highs: Update to 1.12.0-3.
add 157a3afd99 gnu: r-pdftools: Update to 3.7.0.
add 7be00e3a3d gnu: r-viridislite: Update to 0.4.3.
add e3ddcfe89a gnu: r-rsqlite: Update to 2.4.6.
add 62d21bc9db gnu: r-segmented: Update to 2.2-1.
add fc7f7301a9 gnu: r-robustbase: Update to 0.99-7.
add 446a5a0bc5 gnu: r-systempiperdata: Update to 2.14.4.
add ed5af8efe4 gnu: r-anvil: Update to 1.22.5.
add a6d16216e2 gnu: r-bambu: Update to 3.12.1.
add 972a988cb5 gnu: r-complexheatmap: Update to 2.26.1.
add a5b56cd6e4 gnu: r-enmix: Update to 1.46.1.
add 5ecec28dd7 gnu: r-msnid: Update to 1.44.1.
add f24609ef4c gnu: r-scannotatr: Update to 1.16.1.
add 8c886b250a gnu: r-seqarray: Update to 1.50.1.
add 5782124bb4 gnu: r-simona: Update to 1.8.1.
add 5200b1bed5 gnu: r-simplifyenrichment: Update to 2.4.1.
add 9fc268a8ea gnu: r-scds: Update to 1.26.1.
add 69ad88eb91 gnu: r-vsn: Update to 3.78.1.
add f1a3a0999a gnu: r-ggtreeextra: Update to 1.20.1.
add 1852f5e39d gnu: r-enrichedheatmap: Update to 1.40.1.
add 2b62bf4f2e gnu: r-gtrellis: Update to 1.42.1.
add c4b88e5e25 gnu: r-biocpkgtools: Update to 1.28.3.
add 94b82f7c44 gnu: r-pcatools: Update to 2.22.4.
add 458277137b gnu: r-rgreat: Update to 2.12.2.
add c8dc645fbd gnu: r-tximeta: Update to 1.28.3.
add c6d043f8f5 build-system/r: Use %BIOCONDUCTOR-VERSION.
add d2c12da941 gnu: emacs-elisp-autofmt: Update to 0.1-2.8aa1ac5.
add bc4972662b make: Improve handling of git configuration.
add 368c5dbe91 gnu: cl-simple-matrix: Update to 3.14.
add 6682a3b271 gnu: Add cl-magic-square.
add 805c3f44fb gnu: emacs-engrave-faces: Update to 0.3.1-0.0cc5d0b.
add 0f6d6c36d3 gnu: r-biobroom: Replace call of deprecated procedure.
add 311c528948 gnu: r-dtplyr: Update to 1.3.3.
add 3bcf57f353 gnu: r-vpc: Update to 1.2.4.
add a74e1277c9 gnu: Add angelscript.
add add992a5b4 gnu: yactfr: Fix build.
add f39007a89b etc: Add enge to c++ team.
new 9b0f3d1edc Merge remote-tracking branch 'origin/master' into
kernel-updates-20260212-6400-v0
The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
Makefile.am | 57 +-
build-aux/update-guix-package.scm | 6 +-
etc/teams.scm | 2 +-
gnu/home/services/sound.scm | 6 +
gnu/local.mk | 4 +-
gnu/packages/admin.scm | 8 +-
gnu/packages/algebra.scm | 4 +-
gnu/packages/bioconductor.scm | 109 ++--
gnu/packages/bioinformatics.scm | 8 +-
gnu/packages/clojure.scm | 24 +-
gnu/packages/cran.scm | 671 +++++++++++----------
gnu/packages/databases.scm | 6 +-
gnu/packages/duckdb.scm | 4 +-
gnu/packages/emacs-xyz.scm | 49 +-
gnu/packages/engineering.scm | 2 +-
gnu/packages/game-development.scm | 49 +-
gnu/packages/games.scm | 8 +-
gnu/packages/geo.scm | 2 +-
gnu/packages/graphics.scm | 2 +-
gnu/packages/image-processing.scm | 99 ++-
gnu/packages/instrumentation.scm | 2 +-
gnu/packages/irc.scm | 14 +-
gnu/packages/javascript.scm | 176 +++++-
gnu/packages/jupyter.scm | 4 +-
gnu/packages/linux.scm | 10 +-
gnu/packages/lisp-xyz.scm | 34 +-
gnu/packages/logo.scm | 55 +-
gnu/packages/luanti.scm | 4 +-
gnu/packages/maths.scm | 2 +-
gnu/packages/package-management.scm | 10 +-
.../patches/mathjax-4.0.0-disable-webpack.patch | 15 +
gnu/packages/patches/mathjax-4.0.0-no-a11y.patch | 489 +++++++++++++++
gnu/packages/prolog.scm | 4 +-
gnu/packages/python-science.scm | 8 +-
gnu/packages/python-web.scm | 2 +-
gnu/packages/python-xyz.scm | 12 +-
gnu/packages/statistics.scm | 36 +-
gnu/packages/web-browsers.scm | 4 +-
gnu/packages/web.scm | 4 +-
gnu/packages/wm.scm | 6 +-
gnu/packages/xdisorg.scm | 4 +-
gnu/packages/xorg.scm | 2 +-
guix/build-system/r.scm | 10 +-
43 files changed, 1441 insertions(+), 586 deletions(-)
create mode 100644 gnu/packages/patches/mathjax-4.0.0-disable-webpack.patch
create mode 100644 gnu/packages/patches/mathjax-4.0.0-no-a11y.patch
