guix_mirror_bot pushed a commit to branch astro-update
in repository guix.
commit f3e3c27c060646819c5ad859a8e37b88b64f076c
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Thu Feb 19 21:01:30 2026 +0000
gnu: python-pypeit: Update to 2.0.0.
* gnu/packages/astronomy.scm (python-pypeit): Update to 2.0.0.
[arguments] <tests?, test-flags>: Disable test for now.
<phases>: Delete 'sanity-check; add 'relax-requirments.
[propagated-inputs]: Remove python-linetools; add python-scikit-image
and python-specutils.
[native-inputs]: Remove nss-certs-for-test, python-pygit2,
python-pytest, python-scikit-image, python-setuptools,
python-setuptools-scm, python-shapely, and xorg-server-for-tests.
Change-Id: I48f5624fc0da9d25fb7411de02050ad6aed21484
---
gnu/packages/astronomy.scm | 45 +++++++++++++++++++--------------------------
1 file changed, 19 insertions(+), 26 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index fdc68b3d55..a4559b5ea7 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -7836,7 +7836,7 @@ N-Chilada and RAMSES AMR outputs.")
(define-public python-pypeit
(package
(name "python-pypeit")
- (version "1.18.1")
+ (version "2.0.0")
(source
(origin
(method git-fetch)
@@ -7845,30 +7845,29 @@ N-Chilada and RAMSES AMR outputs.")
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "171sbw8r83ll994nn2faz3b7c381hrss84fgih3lqqij1d4395hm"))))
+ (base32 "0nw96iiqswmj6ia48v6p6nxfpj54zlih7d4psm7b7vgma0prxk98"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; tests: 245 passed, 5 deselected, 112 warnings
- #:test-flags
- ;; Tests still try to download test data even it's available in
- ;; "pypeit/data".
- #~(list "--deselect=pypeit/tests/test_install.py::test_install_telluric"
- #$@(map (lambda (test) (string-append "--deselect=pypeit/"
- "tests/test_pkgdata.py::"
- test))
- (list "test_cloud_url"
- "test_fetch_github_files"
- "test_github_contents"
- "test_cache_to_pkg")))
+ ;; TODO: Astropy removed 'coordinates/data/sites.json' from the package
+ ;; which forces to download site data during sanity-check, and check
+ ;; phases, see: <https://github.com/astropy/astropy/pull/18649>,
+ ;; <https://codeberg.org/guix/guix/issues/6371#issuecomment-10784417>.
+ #:tests? #f
#:phases
#~(modify-phases %standard-phases
+ (delete 'sanity-check)
;; XXX: See: <https://github.com/pypeit/PypeIt/issues/1786>.
(add-after 'unpack 'remove-missing-scripts-entry-points
(lambda _
(substitute* "pyproject.toml"
((".*pypeit_install_ql_calibs.*") "")
((".*pypeit_ql_multislit.*") ""))))
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "pyproject.toml"
+ ;; numpy>=2.4.1
+ ((">=2.4.1") ">=2.3.1"))))
(add-after 'install 'include-package-data
;; XXX: PyPI archive provides pypeit/data but during build from
;; Git it's ignored for some reason, add it manually.
@@ -7883,16 +7882,8 @@ N-Chilada and RAMSES AMR outputs.")
(setenv "HOME" "/tmp")
(setenv "MPLBACKEND" "agg"))))))
(native-inputs
- (list nss-certs-for-test
- python-cython
- python-pygit2
- python-pytest
- python-scikit-image
- python-setuptools
- python-setuptools-scm
- python-shapely
- python-specutils
- xorg-server-for-tests))
+ (list python-cython
+ python-specutils))
(propagated-inputs
(list python-astropy
python-bottleneck
@@ -7900,7 +7891,6 @@ N-Chilada and RAMSES AMR outputs.")
python-fast-histogram
python-ginga
python-ipython
- python-linetools
python-matplotlib
python-numpy
python-packaging
@@ -7910,7 +7900,10 @@ N-Chilada and RAMSES AMR outputs.")
python-pyyaml
python-qtpy
python-scikit-learn
- python-scipy))
+ python-scipy
+ ;; [optional]
+ python-scikit-image
+ python-specutils))
(home-page "https://github.com/pypeit/PypeIt";)
(synopsis "Spectroscopic Data Reduction Pipeline")
(description
