guix_mirror_bot pushed a commit to branch master
in repository guix.
commit fbd7a689457bfd9e27bd271c335959a3fbc280bd
Author: Andreas Enge <[email protected]>
AuthorDate: Wed Mar 18 18:27:32 2026 +0100
gnu: Remove fastx-toolkit.
* gnu/packages/bioinformatics.scm (fastx-toolkit): Delete variable.
Change-Id: Ie710da17d23a04cfaafc1de28b2dc6aae23ccfd4
---
gnu/packages/bioinformatics.scm | 33 ---------------------------------
1 file changed, 33 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ca7c06121e..ec5af92005 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8461,39 +8461,6 @@ reasonable amount of time and memory. For large
alignments, FastTree is
100-1,000 times faster than PhyML 3.0 or RAxML 7.")
(license license:gpl2+)))
-(define-public fastx-toolkit
- (package
- (name "fastx-toolkit")
- (version "0.0.14")
- (source (origin
- (method url-fetch)
- (uri
- (string-append
- "https://github.com/agordon/fastx_toolkit/releases/download/";
- version "/fastx_toolkit-" version ".tar.bz2"))
- (sha256
- (base32
- "01jqzw386873sr0pjp1wr4rn8fsga2vxs1qfmicvx1pjr72007wy"))))
- (build-system gnu-build-system)
- (inputs
- (list libgtextutils))
- (native-inputs
- (list gcc-6 ;; doesn't build with later versions
- pkg-config))
- (home-page "http://hannonlab.cshl.edu/fastx_toolkit/";)
- (synopsis "Tools for FASTA/FASTQ file preprocessing")
- (description
- "The FASTX-Toolkit is a collection of command line tools for Short-Reads
-FASTA/FASTQ files preprocessing.
-
-Next-Generation sequencing machines usually produce FASTA or FASTQ files,
-containing multiple short-reads sequences. The main processing of such
-FASTA/FASTQ files is mapping the sequences to reference genomes. However, it
-is sometimes more productive to preprocess the files before mapping the
-sequences to the genome---manipulating the sequences to produce better mapping
-results. The FASTX-Toolkit tools perform some of these preprocessing tasks.")
- (license license:agpl3+)))
-
(define-public flash
(package
(name "flash")
