guix_mirror_bot pushed a commit to branch master
in repository guix.
commit d40667e9d9947041449d5d306051c2fb74cf34d9
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Mon May 25 23:57:00 2026 +0100
gnu: packages/python-science: Sort python-[am] variables.
* gnu/packages/python-science.scm (9python-dvc-data, python-dvc-objects,
python-einops, python-fbpca): Sort variables alphabetically.
Change-Id: I19e296bfcc2360e81ceaa81fd44688645113c1a4
---
gnu/packages/python-science.scm | 314 ++++++++++++++++++++--------------------
1 file changed, 157 insertions(+), 157 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 68e4b62c80..ce205d7c5b 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1152,6 +1152,93 @@ computing in Python. It extends both the
@code{concurrent.futures} and
@code{dask} APIs to moderate sized clusters.")
(license license:bsd-3)))
+(define-public python-dvc-data
+ (package
+ (name "python-dvc-data")
+ (version "3.16.12")
+ (home-page "https://github.com/iterative/dvc-data";)
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "dvc_data" version))
+ (sha256
+ (base32
+ "156iwdn7v5jhwbpwz92n28qiasgcbmcqv9vxg8xbvdfxzlzw0b7r"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs
+ (list python-attrs
+ python-dictdiffer
+ python-diskcache
+ python-dvc-objects
+ python-fsspec
+ python-funcy-1.14
+ python-orjson
+ python-pygtrie
+ python-sqltrie
+ python-tqdm))
+ (native-inputs
+ (list python-click
+ python-pytest
+ python-pytest-benchmark
+ python-pytest-mock
+ ;; python-pytest-servers is not packaged in Guix yet
+ python-setuptools
+ python-setuptools-scm
+ python-typer
+ python-wheel))
+ (arguments
+ (list
+ #:test-flags
+ ;; TODO: package python-pytest-server with its transitive dependencies
+ #~(list "--ignore=tests/hashfile/test_db.py"
+ "--ignore=tests/hashfile/test_db_index.py"
+ "--ignore=tests/hashfile/test_obj.py"
+ "--ignore=tests/index/test_build.py"
+ "--ignore=tests/index/test_checkout.py"
+ "--ignore=tests/index/test_fs.py"
+ "--ignore=tests/index/test_index.py"
+ "--ignore=tests/index/test_storage.py")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'patch-pyproject
+ (lambda _
+ ;; setuptools cannot handle both license and license-files
+ (substitute* "pyproject.toml"
+ (("^license = .*") "license = {text = \"Apache-2.0\"}\n")
+ (("^license-files = .*") "")))))))
+ (synopsis "DVC's data management subsystem")
+ (description "Dvc data is DVC's data management subsystem.")
+ (license license:asl2.0)))
+
+(define-public python-dvc-objects
+ (package
+ (name "python-dvc-objects")
+ (version "5.1.1")
+ (home-page "https://github.com/iterative/dvc-objects";)
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "dvc_objects" version))
+ (sha256
+ (base32 "1amx5z8k2v2hbsajg0dcd5dxmmlv9bnbchpas95s8sj86cm8yc4y"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-fsspec
+ python-funcy-1.14))
+ (native-inputs
+ (list python-mypy
+ python-pytest
+ python-pytest-asyncio
+ python-pytest-benchmark
+ python-pytest-mock
+ python-pytest-sugar
+ python-reflink
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (synopsis "Filesystem and object-db level abstractions for DVC")
+ (description "Dvc objects provides a filesystem and object-db level
+abstractions to use in dvc and dvc-data.")
+ (license license:asl2.0)))
+
(define-public python-ecos
(package
(name "python-ecos")
@@ -1198,6 +1285,47 @@ numerical software for solving convex second-order cone
programs (SOCPs).")
which uncovers hidden structures in categorical data")
(license license:expat)))
+(define-public python-einops
+ (package
+ (name "python-einops")
+ (version "0.8.1")
+ (source
+ (origin
+ (method git-fetch) ;PyPI misses .ipynb files required for tests
+ (uri (git-reference
+ (url "https://github.com/arogozhnikov/einops";)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "07xd5a4sya3mr003f17hxykcbq3zf3mnr51qagv7fy55qcnbkn97"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ ;; Skip optional dependency on Jupyter during tests.
+ #~(list "--ignore=scripts/test_notebooks.py")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'set-backend
+ (lambda _
+ ;; Einops supports different backends, but we test
+ ;; only NumPy for availability and simplicity.
+ (setenv "EINOPS_TEST_BACKENDS" "numpy"))))))
+ (native-inputs
+ (list python-hatchling
+ python-nbconvert
+ python-nbformat
+ python-parameterized
+ python-pytest))
+ (propagated-inputs
+ (list python-numpy))
+ (home-page "https://einops.rocks/";)
+ (synopsis "Tensor operations for different backends")
+ (description
+ "Einops provides a set of tensor operations for NumPy and multiple deep
+learning frameworks.")
+ (license license:expat)))
+
(define-public python-fast-histogram
(package
(name "python-fast-histogram")
@@ -1270,6 +1398,35 @@ clustering schemes efficiently. The package is made
with two interfaces to
standard software: R and Python.")
(license license:bsd-2)))
+;; XXX: Not maintained since 2019. The project was archived by the owner on
+;; Nov 2, 2020. It is now read-only.
+(define-public python-fbpca
+ (package
+ (name "python-fbpca")
+ (version "1.0")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "fbpca" version))
+ (sha256
+ (base32
+ "1lbjqhqsdmqk86lb86q3ywf7561zmdny1dfvgwqkyrkr4ij7f1hm"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ ;; TypeError: 'dia_matrix' object is not subscriptable
+ #~(list "--deselect=fbpca.py::TestPCA::test_sparse"
+ "fbpca.py")))
+ (native-inputs (list python-pytest python-setuptools))
+ (propagated-inputs
+ (list python-numpy python-scipy))
+ (home-page "https://fbpca.readthedocs.io/";)
+ (synopsis "Functions for principal component analysis and accuracy checks")
+ (description
+ "This package provides fast computations for @dfn{principal component
+analysis} (PCA), SVD, and eigendecompositions via randomized methods")
+ (license license:bsd-3)))
+
(define-public python-fgivenx
(package
(name "python-fgivenx")
@@ -4664,76 +4821,6 @@ changed, it made sense to abstract away the nuisance of
having to re-learn
them.")
(license license:bsd-3)))
-;; XXX: Not maintained since 2019. The project was archived by the owner on
-;; Nov 2, 2020. It is now read-only.
-(define-public python-fbpca
- (package
- (name "python-fbpca")
- (version "1.0")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "fbpca" version))
- (sha256
- (base32
- "1lbjqhqsdmqk86lb86q3ywf7561zmdny1dfvgwqkyrkr4ij7f1hm"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- ;; TypeError: 'dia_matrix' object is not subscriptable
- #~(list "--deselect=fbpca.py::TestPCA::test_sparse"
- "fbpca.py")))
- (native-inputs (list python-pytest python-setuptools))
- (propagated-inputs
- (list python-numpy python-scipy))
- (home-page "https://fbpca.readthedocs.io/";)
- (synopsis "Functions for principal component analysis and accuracy checks")
- (description
- "This package provides fast computations for @dfn{principal component
-analysis} (PCA), SVD, and eigendecompositions via randomized methods")
- (license license:bsd-3)))
-
-(define-public python-einops
- (package
- (name "python-einops")
- (version "0.8.1")
- (source
- (origin
- (method git-fetch) ;PyPI misses .ipynb files required for tests
- (uri (git-reference
- (url "https://github.com/arogozhnikov/einops";)
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32 "07xd5a4sya3mr003f17hxykcbq3zf3mnr51qagv7fy55qcnbkn97"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- ;; Skip optional dependency on Jupyter during tests.
- #~(list "--ignore=scripts/test_notebooks.py")
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'set-backend
- (lambda _
- ;; Einops supports different backends, but we test
- ;; only NumPy for availability and simplicity.
- (setenv "EINOPS_TEST_BACKENDS" "numpy"))))))
- (native-inputs
- (list python-hatchling
- python-nbconvert
- python-nbformat
- python-parameterized
- python-pytest))
- (propagated-inputs
- (list python-numpy))
- (home-page "https://einops.rocks/";)
- (synopsis "Tensor operations for different backends")
- (description
- "Einops provides a set of tensor operations for NumPy and multiple deep
-learning frameworks.")
- (license license:expat)))
-
(define-public python-uhi
(package
(name "python-uhi")
@@ -6304,93 +6391,6 @@ well as key metadata and SIRENE database containing data
on all French
compagnies.")
(license license:expat)))
-(define-public python-dvc-objects
- (package
- (name "python-dvc-objects")
- (version "5.1.1")
- (home-page "https://github.com/iterative/dvc-objects";)
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "dvc_objects" version))
- (sha256
- (base32 "1amx5z8k2v2hbsajg0dcd5dxmmlv9bnbchpas95s8sj86cm8yc4y"))))
- (build-system pyproject-build-system)
- (propagated-inputs (list python-fsspec
- python-funcy-1.14))
- (native-inputs
- (list python-mypy
- python-pytest
- python-pytest-asyncio
- python-pytest-benchmark
- python-pytest-mock
- python-pytest-sugar
- python-reflink
- python-setuptools
- python-setuptools-scm
- python-wheel))
- (synopsis "Filesystem and object-db level abstractions for DVC")
- (description "Dvc objects provides a filesystem and object-db level
-abstractions to use in dvc and dvc-data.")
- (license license:asl2.0)))
-
-(define-public python-dvc-data
- (package
- (name "python-dvc-data")
- (version "3.16.12")
- (home-page "https://github.com/iterative/dvc-data";)
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "dvc_data" version))
- (sha256
- (base32
- "156iwdn7v5jhwbpwz92n28qiasgcbmcqv9vxg8xbvdfxzlzw0b7r"))))
- (build-system pyproject-build-system)
- (propagated-inputs
- (list python-attrs
- python-dictdiffer
- python-diskcache
- python-dvc-objects
- python-fsspec
- python-funcy-1.14
- python-orjson
- python-pygtrie
- python-sqltrie
- python-tqdm))
- (native-inputs
- (list python-click
- python-pytest
- python-pytest-benchmark
- python-pytest-mock
- ;; python-pytest-servers is not packaged in Guix yet
- python-setuptools
- python-setuptools-scm
- python-typer
- python-wheel))
- (arguments
- (list
- #:test-flags
- ;; TODO: package python-pytest-server with its transitive dependencies
- #~(list "--ignore=tests/hashfile/test_db.py"
- "--ignore=tests/hashfile/test_db_index.py"
- "--ignore=tests/hashfile/test_obj.py"
- "--ignore=tests/index/test_build.py"
- "--ignore=tests/index/test_checkout.py"
- "--ignore=tests/index/test_fs.py"
- "--ignore=tests/index/test_index.py"
- "--ignore=tests/index/test_storage.py")
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'patch-pyproject
- (lambda _
- ;; setuptools cannot handle both license and license-files
- (substitute* "pyproject.toml"
- (("^license = .*") "license = {text = \"Apache-2.0\"}\n")
- (("^license-files = .*") "")))))))
- (synopsis "DVC's data management subsystem")
- (description "Dvc data is DVC's data management subsystem.")
- (license license:asl2.0)))
-
(define-public python-pyqtgraph
(package
(name "python-pyqtgraph")
