guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit d3cf538811f76bd1b816d4793aa251bd178bc05c
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Mon Jul 13 00:02:47 2026 +0100
gnu: python-scprep: Skip more tests.
* gnu/packages/bioinformatics.scm (python-scprep):
[arguments] <#:test-flags>: Skip 9 more tests.
---
gnu/packages/bioinformatics.scm | 17 +++++++++++++++--
1 file changed, 15 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d5ee61a670..7dbe3c13e6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4056,6 +4056,8 @@ counts.")
(license license:expat)))
(define-public python-scprep
+ ;; XXX: Project has no update since <2023-06-19> and probably is not
+ ;; compatible with Pandas 3 and NumPy 2.4.
(package
(name "python-scprep")
(version "1.2.3")
@@ -4071,7 +4073,7 @@ counts.")
(build-system pyproject-build-system)
(arguments
(list
- ;; tests: 344 passed
+ ;; tests: 326 passed
#:test-flags
;; XXX: Mixture of remote data download and some assertion errors.
;;
@@ -4112,7 +4114,18 @@ counts.")
"test_conversion_array"
"test_conversion_dataframe"
"test_conversion_anndata_missing"
- "test_r_traceback)")
+ "test_r_traceback"
+ ;; Pandas compatibility faileurs, see:
+ ;; <https://github.com/KrishnaswamyLab/scprep/issues/144>.
+ "test_batch_mean_center"
+ "test_batch_mean_center_one_sample"
+ "test_dense"
+ "test_libsize_norm_rescale_integer"
+ "test_libsize_norm_rescale_mean"
+ "test_libsize_norm_rescale_median"
+ "test_libsize_norm_rescale_none"
+ "test_matrix_transpose"
+ "test_pandas_series_rmatmul)")
"|")
"test")
#:phases
