guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit f4d9eea0f4283d9681ae9f04b158eb609ebca42e
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Mon Jun 1 10:26:44 2026 +0100
gnu: python-scipy: Update to 1.17.1.
* gnu/packages/python-science.scm (python-scipy): Update to 1.17.1.
[arguments] <test-flags>: Rework skipped tests, run more.
[inputs]: Remove boost-1.88 and pybind11-2; add boost and pybind11.
[native-inputs]: Remove python-click, python-doit, python-numpydoc,
python-pycodestyle, python-pydevtool, python-rich-click, and
python-typing-extensions.
Change-Id: Ib7aa47ec497c1f15c7309387313e52a029f4919d
---
gnu/packages/python-science.scm | 35 +++++++++++------------------------
1 file changed, 11 insertions(+), 24 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 0f68e312b5..46fac35207 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -3665,7 +3665,7 @@ cross-validation.")
(define-public python-scipy
(package
(name "python-scipy")
- (version "1.16.3")
+ (version "1.17.1")
;; TODO: PyPI archive bundles extra in subprojects:
;; - https://github.com/boostorg/math
;; - https://github.com/scipy/HiGHS
@@ -3676,16 +3676,16 @@ cross-validation.")
(method url-fetch)
(uri (pypi-uri "scipy" version))
(sha256
- (base32 "1jxf6mjr3whbh23p8bnlcyiss5rsamq37qgys8xz8qi781cpds01"))))
+ (base32 "1h4pn8i33cf5jzlh6hs6sjg10i8x1ch35y5f4v11d26bv09f1n4m"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; tests: 78689 passed, 4982 skipped, 319 xfailed, 19 xpassed, 2660
warnings
+ ;; tests: 81362 passed, 7493 skipped, 313 xfailed, 28 xpassed, 225
warnings
#:configure-flags
''(("setup-args" . #("-Duse-system-libraries=all")))
#:test-flags
#~(list "--durations=10"
- "--numprocesses" (number->string (min 4 (parallel-job-count)))
+ "--numprocesses" (number->string (min 8 (parallel-job-count)))
"--pyargs" "scipy"
"-k" (string-join
;; Network access is required.
@@ -3699,26 +3699,20 @@ cross-validation.")
;; AssertionError: Items are not equal: ACTUAL:
;; np.complex128(inf+nanj) DESIRED: (inf+0j)
"test_expm1_complex"
- ;; AssertionError: Not equal to tolerance
rtol=1e-07, atol=0
- "test_log1p_complex"
- ;; AssertionError: Not equal to tolerance
rtol=5e-09, atol=0
-
"test_nctdtr_accuracy[3.0-5.0--2.0-1.5645373999149622e-09-5e-09]"
;; Bad results (X out of Y) for the following points
;; (in output 0):
"test_spherical_in_complex"
"test_spherical_jn_complex"
"test_spherical_kn"
"test_spherical_yn_complex"
- ;; Not equal to tolerance rtol=1e-07, atol=0
+ ;; Not equal to tolerance <...>
+ "test_log1p_complex"
"test_negative_real_gh14582[spherical_in-False]"
"test_negative_real_gh14582[spherical_in-True]"
- "test_negative_real_gh14582[spherical_jn-False]"
+ "test_negative_real_gh14582[spherical_jn-False"
"test_negative_real_gh14582[spherical_jn-True]"
"test_negative_real_gh14582[spherical_yn-False]"
- "test_negative_real_gh14582[spherical_yn-True]"
- ;; Failed: DID NOT WARN. No warnings of type (<class
- ;; 'RuntimeWarning'>,) were emitted.
- "test_boost_eval_issue_14606")
+ "test_negative_real_gh14582[spherical_yn-True]")
" and not "))
#:phases
#~(modify-phases %standard-phases
@@ -3744,26 +3738,19 @@ cross-validation.")
(native-inputs
(list gfortran
pkg-config
- python-click
- python-doit
python-hypothesis
python-meson
python-mpmath
- python-numpydoc
python-pooch
- python-pycodestyle
- python-pydevtool
python-pytest
python-pytest-timeout
python-pytest-xdist
python-pythran
- python-rich-click
- python-threadpoolctl
- python-typing-extensions))
+ python-threadpoolctl))
(inputs
- (list boost-1.88
+ (list boost
openblas
- pybind11-2
+ pybind11
qhull
xsimd))
(propagated-inputs
