guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit 2391be0b8bf6bf149c1a9ba5d95d25cf1a746cec
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Tue Jun 16 21:36:05 2026 +0100
gnu: python-pandera: Update to 0.31.1.
* gnu/packages/python-science.scm (python-pandera): Update to 0.31.1.
[arguments] <test-flags>: Disable tests for Modin, enable for Polars;
simplify skipped tests.
[inputs]: Remove python-modin; add python-polars.
[native-inputs]: Add python-black, python-mypy-for-tests, python-pytz,
python-sphinx, and tzdata-for-tests.
Change-Id: Ie750a3795d87fec54386c35aec6f569c7798f55f
---
gnu/packages/python-science.scm | 42 ++++++++++++++++++++---------------------
1 file changed, 21 insertions(+), 21 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 4dd313072e..dc1353ba09 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -4690,46 +4690,46 @@ idea of the remaining amount of computation to be
done.")
(define-public python-pandera
(package
(name "python-pandera")
- (version "0.27.1")
+ (version "0.31.1")
(source
(origin
+ ;; XXX: Sanity-check fails to load when switched to git-fetch.
(method url-fetch)
(uri (pypi-uri "pandera" version))
(sha256
- (base32 "1x5vjp1ra252ncyfsfrc7vck5snx807mpwzd0hvv0vpi9v096934"))))
+ (base32 "04qgmcfvw78ccfnmidhy3zw1i99nyjkz3b0klsd4ypgiia3a6nn7"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; tests: 3033 passed, 51 skipped, 11 xfailed, 8385 warnings
+ ;; tests: 3810 passed, 22 skipped, 21 xfailed, 5923 warnings
#:test-flags
;; With higher threads count tests randomly fail during collection.
#~(list "--numprocesses" (number->string (min 4 (parallel-job-count)))
;; TODO: Ignore tests for not packaged python-ibis-framework,
- ;; python-polars, and python-pyspark.
+ ;; and python-pyspark.
"--ignore=tests/ibis"
- "--ignore=tests/polars"
"--ignore=tests/pyspark"
- ;; E ModuleNotFoundError: No module named 'sphinx'
- "--ignore=tests/pandas/test_docs_setting_column_widths.py"
- ;; Network access is required.
- "--ignore=tests/fastapi/test_app.py"
- ;; TypeError: __class__ assignment: 'GeoDataFrame' object layout
- ;; differs from 'DataFrame'
- "-k" (string-join
- (list "not test_schema_model[data0-True]"
- "test_schema_from_dataframe[data1-True]"
- "test_schema_no_geometry"
- ;; The most of the tests from this group XFAIL or
fail.
- "test_pandas_stubs_false_positives")
- " and not "))))
+ ;; Not compatible with Pandas 3 yet.
+ "--ignore=tests/modin"
+ ;; Tests fail to connect to 127.0.0.1:52245, connection refused.
+ "--deselect=tests/fastapi/test_app.py::test_items_endpoint"
+
"--deselect=tests/fastapi/test_app.py::test_transactions_endpoint"
+ "--deselect=tests/fastapi/test_app.py::test_upload_file_endpoint"
+ ;; frictionless is not packaged yet.
+ "-k" "not test_frictionless_schema_")))
(native-inputs
(list python-joblib
+ python-black ;some tets depent on it
+ python-mypy-for-tests
python-pytest
python-pytest-asyncio
python-pytest-xdist
+ python-pytz
python-setuptools
python-setuptools-scm
- python-uvicorn))
+ python-sphinx ;some tets depent on it
+ python-uvicorn
+ tzdata-for-tests))
(inputs
;; [optional]
;; Pandera comes with a lot of extras. We test as many as possible, but do
@@ -4741,10 +4741,10 @@ idea of the remaining amount of computation to be
done.")
python-geopandas
python-hypothesis
;; python-ibis-framework ;missing from Guix
- python-modin
+ ;; python-modin ;blocked by guix/guix#9336
python-numpy
python-pandas
- ;; python-polars ;missing from Guix
+ python-polars
;; python-pyspark ;missing from Guix
;; python-ray ;missing from Guix
python-scipy
