guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit 5566c786f6c5c1ee61b5aeac9913eb7816347063
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Fri May 29 23:17:27 2026 +0100
gnu: python-numpy: Update to 2.4.6.
This update includes releases since 2.3.1 (2025-06-21):
- 2.4.6 (2026-05-19)
- 2.4.5 (2026-05-15)
- 2.4.4 (2026-03-29)
- 2.4.3 (2026-03-09)
- 2.4.2 (2026-02-01)
- 2.4.1 (2026-01-10)
- 2.4.0 (2025-12-20)
- 2.4.0rc1 (2025-12-03)
- 2.3.5 (2025-11-16)
- 2.3.4 (2025-10-15)
- 2.3.3 (2025-09-09)
- 2.3.2 (2025-07-24)
For more details see: <https://numpy.org/doc/stable/release.html>.
* gnu/packages/python-xyz.scm (python-numpy): Update to 2.4.6.
[arguments] <test-flags>: Run all tests.
[phases]{patch-bin-true}: Merge into {fix-executable-paths} to resolve
TODO note.
{check}: Clean up .pytest_cache after tests.
[inputs]: Add bash and openblas.
[native-inputs]: Remove python-setuptools, and python-typing-extensions;
add python-cython.
Fixes: guix/guix#5988
Change-Id: Ic9eac9d573cb63be760d8fdbd7090ed1cd879926
---
gnu/packages/python-xyz.scm | 46 ++++++++++++++++++++++-----------------------
1 file changed, 22 insertions(+), 24 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index c2e0f80e16..1c4d613203 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -12068,49 +12068,41 @@ def load_dynamic(name, path):
(define-public python-numpy
(package
(name "python-numpy")
- (version "2.3.1")
+ (version "2.4.6")
(source
(origin
+ ;; XXX: When switching to Git it fails to find Numpy's fork of Meson
+ ;; git submodule -- <https://github.com/numpy/meson>.
(method url-fetch)
(uri (string-append
"https://github.com/numpy/numpy/releases/download/v";
version "/numpy-" version ".tar.gz"))
(sha256
- (base32 "0aqx8hsw54wfp7iv0h0ljlpsygvmrmi3rjic6rsa6v92lhhaxj8y"))))
+ (base32 "1nkx73blw298dzdk6blhrsann60cgdy7q6n3q9m785ia9865g8zk"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; tests: 47513 passed, 1740 skipped, 33 xfailed, 5 xpassed, 341 warnings
+ ;; tests: 47255 passed, 1079 skipped, 32 xfailed, 2 xpassed, 318 warnings
#:modules '((guix build utils)
(guix build pyproject-build-system)
(ice-9 format))
#:test-flags
#~(list "-m" "not slow"
- "--numprocesses" (number->string (min 8 (parallel-job-count)))
- ;; See: <https://github.com/numpy/numpy/issues/27531>,
- ;; <https://github.com/numpy/numpy/issues/17685>,
- ;; <https://github.com/numpy/numpy/issues/17635>.
- "-k" "not test_api_importable")
+ "--numprocesses" (number->string (min 8 (parallel-job-count))))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'fix-executable-paths
- (lambda _
+ (lambda* (#:key inputs #:allow-other-keys)
(substitute* "numpy/distutils/exec_command.py"
(("'/bin/sh'")
(format #f "~s" (which "bash"))))
(substitute* "numpy/meson.build"
;; Relay on python from the PATH instead of full reference
;; stored in built wheel.
- (("'py.full_path\\(\\)'") "'python'"))))
- ;; This isn't architecture specific.
- ;; TODO: Remove this conditional and apply for all builds.
- #$@(if (target-ppc64le?)
- #~((add-after 'unpack 'patch-bin-true
- (lambda* (#:key inputs #:allow-other-keys)
- (substitute* "numpy/_core/tests/test_cpu_features.py"
- (("/bin/true")
- (search-input-file inputs "bin/true"))))))
- #~())
+ (("'py.full_path\\(\\)'") "'python'"))
+ (substitute* "numpy/_core/tests/test_cpu_features.py"
+ (("/bin/true")
+ (search-input-file inputs "bin/true")))))
(add-before 'build 'parallelize-build
(lambda _
(setenv "OMP_NUM_THREAD"
@@ -12130,7 +12122,7 @@ def load_dynamic(name, path):
(string-split (getenv "CPLUS_INCLUDE_PATH")
#\:))
":")))))
(add-before 'build 'configure-blas
- (lambda* (#:key inputs #:allow-other-keys)
+ (lambda _
(call-with-output-file "site.cfg"
(lambda (port)
(format port
@@ -12142,7 +12134,11 @@ include_dirs = ~:*~a/include~%" #$(this-package-input
"openblas"))))))
(lambda* (#:key tests? test-flags #:allow-other-keys)
(when tests?
(with-directory-excursion #$output
- (apply invoke "pytest" test-flags)))))
+ (apply invoke "pytest" test-flags)
+ (let ((pytest-cache (string-append #$output
+ "/.pytest_cache")))
+ (when (access? pytest-cache X_OK)
+ (delete-file-recursively pytest-cache)))))))
;; The executables provided by this package ('f2py' and
'numpy-config')
;; only depend on Python. By customizing the wrap phase we can
ensure
;; that we don't add all Python packages listed in native-inputs to
@@ -12159,12 +12155,14 @@ include_dirs = ~:*~a/include~%" #$(this-package-input
"openblas"))))))
(find-files (in-vicinity #$output "/bin"))))))))
(native-inputs
(list gfortran
+ python-cython
python-hypothesis
python-meson
python-pytest
- python-pytest-xdist
- python-setuptools
- python-typing-extensions))
+ python-pytest-xdist))
+ (inputs
+ (list bash
+ openblas))
(home-page "https://numpy.org";)
(synopsis "Fundamental package for scientific computing with Python")
(description "NumPy is the fundamental package for scientific computing
