guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit bf395afbedd61cc4127ce578d399b7a1141cd779
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Wed Jun 10 13:10:41 2026 +0100
gnu: python-xarray: Update to 2026.04.0.
* gnu/packages/python-science.scm (python-xarray): Update to 2026.04.0.
[source]: Switch to git-fetch.
[arguments] <test-flags>: Run tests in parallel, skip problematic tests.
[propagated-inputs]: Add python-bottleneck, python-numba,
and python-scipy-minimal.
[native-inputs]: Add python-pytz, python-pytest-xdist, and
tzdata-for-tests.
Change-Id: Iada5e0b3302ee1d7b7adbcbc4ba974fb602bc1fe
---
gnu/packages/python-science.scm | 55 +++++++++++++++++++++++++++++++++--------
1 file changed, 45 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index def5da63a1..223a321ecc 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -5291,17 +5291,29 @@ two-dimensional renderings such as scatter plots and
histograms.
(define-public python-xarray
(package
(name "python-xarray")
- (version "2025.12.0")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "xarray" version))
- (sha256
- (base32
- "1vczqm5daz79n7w3ycd0m1wf0bf78wd84w6xbgac8sfcvkxadxkk"))))
+ (version "2026.04.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pydata/xarray";)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1ma0k5gw5frldms4zrgp5ww0l1m5h5620ks5sdljbjz4wqbsf9di"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; tests: 6677 passed, 9632 skipped, 14 xfailed, 4 xpassed, 53 warnings
+ ;; tests: 7500 passed, 9135 skipped, 24 xfailed, 6 xpassed, 45 warnings
+ #:test-flags
+ #~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
+ ;; Regression in Pandas 3.0.3.
+ ;; See: <https://github.com/pydata/xarray/issues/11359>.
+ (string-append "--deselect=properties/test_pandas_roundtrip.py"
+ "::test_roundtrip_pandas_dataframe_datetime")
+ ;; See: <https://github.com/pydata/xarray/issues/10548>.
+ (string-append "--deselect=xarray/tests/test_dataset.py"
+ "::TestDataset::test_repr"))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'fix-pytest-config
@@ -5311,12 +5323,35 @@ two-dimensional renderings such as scatter plots and
histograms.
(native-inputs
(list python-pytest
python-pytest-asyncio
+ python-pytest-xdist
+ python-pytz
python-setuptools
- python-setuptools-scm))
+ python-setuptools-scm
+ tzdata-for-tests))
(propagated-inputs
(list python-numpy
python-packaging
- python-pandas))
+ python-pandas
+ ;; [optional]
+ python-bottleneck
+ ;; python-cartopy
+ ;; python-cftime
+ ;; python-dask
+ ;; python-flox
+ ;; python-fsspec
+ ;; python-h5netcdf
+ ;; python-matplotlib
+ ;; python-nc-time-axis
+ ;; python-netcdf4
+ python-numba
+ ;; python-numbagg ;blocked by guix/guix#9344
+ ;; python-opt-einsum
+ ;; python-pooch
+ ;; python-pydap
+ python-scipy-minimal ;to slim down closure size
+ ;; python-seaborn
+ ;; python-sparse
+ #;python-zarr))
(home-page "https://github.com/pydata/xarray";)
(synopsis "N-D labeled arrays and datasets")
(description "Xarray (formerly xray) makes working with labelled
